Template-based Modeling Results for PYRB_ECOLI

Submitted Primary Sequence

>Length 311
MANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL
CCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEEEHHHHCCCCHHHHHHHHHCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL
55232333200103202331022001002403233323103210000002111221100000004301110000122231221431120100010020100000010123200200031013000000010213100100000010022214033010000010310300000020003021020000004212123200210343211010010022002301000000023232232202202320102120032032201000000212201230151220100210110100010000101333224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL
1	MUSTER	2be7A	0.744	0.994	3.896	threading_1	-ANPLFRKHIVSINDISRNELELIVKTAAKLKEQPQPELLKNKVIASCFFEASTRTRLSFETAIQRLGGSVIGFDNAGNTSLAKKGETLADSISVISSYADAFVMRHPQEGAARLASEFS-NVPVINGGDGSNQHPTQTLLDLFSIYETQGRLDNLNIAFVGDLKYGRTVHSLAQALAKFDGCKFHFIAPDALAMPEYICDELDEQNISYATYASIEEVVPEIDVLYMTRVQKERFDETEYQHMKAGFILSASSLVHAKPNLKVLHPLPRVDEIATDVDKTPYAYYFQQAENGVYAREALLALVLNETIGE
2	SPARKS	1ekxa	1.000	0.997	5.666	threading_2	-ANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL
3	PROSPECT2	1ekxa	1.000	0.997	5.040	threading_3	-ANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL
4	PPA-I	2be7A	0.744	0.994	6.250	threading_4	-ANPLFRKHIVSINDISRNELELIVKTAAKLKEQPQPELLKNKVIASCFFEASTRTRLSFETAIQRLGGSVIGFDNAGNTSLAKKGETLADSISVISSYADAFVMRHPQEGAARLASEFS-NVPVINGGDGSNQHPTQTLLDLFSIYETQGRLDNLNIAFVGDLKYGRTVHSLAQALAKFDGCKFHFIAPDALAMPEYICDELDEQNISYATYASIEEVVPEIDVLYMTRVQKERFDETEYQHMKAGFILSASSLVHAKPNLKVLHPLPRVDEIATDVDKTPYAYYFQQAENGVYAREALLALVLNETIGE
5	HHPRED-l	3csu_A	1.000	0.923	3.402	threading_5	-ANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDS-----GKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTR-----------------FVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLV-
6	HHPRED-g	3csu_A	1.000	0.926	2.837	threading_6	-ANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDS-----GKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTR-----------------FVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL
7	SP3	1ekxa	1.000	0.997	5.541	threading_7	-ANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL
8	SAM-T99	1ml4A	0.532	0.968	4.728	threading_8	---DWKGRDVISIRDFSKEDIETVLATAERLEEKGQLEYAKGKILATLFFEPSTRTRLSFESAMHRLGGAVIGFAE-ASTSSVKKGESLRDTIKTVEQYCDVIVIRHPKEGAARLAAE-VAEVPVINAGDGSNQHPTQTLLDLYTIKKEFGRIDGLKIGLLGDLKYGRTVHSLAEALTFYD-VELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQKERFPDQEYLKVKGSYQVNLKVLEKAKDELRIMHPLPRVDEIHPEVDNTKHAIYFRQVFNGVPVRMALLALVLGV----
9	MUSTER	1ml4A	0.530	0.971	3.644	threading_9	---DWKGRDVISIRDFSKEDIETVLATAERLEREGQLEYAKGKILATLFFEPSTRTRLSFESAMHRLGGAVIGFAEA-STSSVKKGESLRDTIKTVEQYCDVIVIRHPKEGAARLAAEVA-EVPVINAGDGSNQHPTQTLLDLYTIKKEFGRIDGLKIGLLGDLKYGRTVHSLAEALTFY-DVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQKERFDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPLPRVDEIHPEVDNTKHAIYFRQVFNGVPVRMALLALVLG---VI
10	SPARKS	1otha	0.231	0.974	4.898	threading_10	-KVQLKGRDLLTLKNFTGEEIKYMLWLSADLKFGEYLPLLQGKSLGMIFEKRSTRTRLSTETGFALLGGHPCFLT--TQDIHLGVNESLTDTARVLSSMADAVLARVYKQSDLDTLAKEA-SIPIIN-GLSDLYHPIQILADYLTLQEHYSSLKGLTLSWIGD--GNNILHSIMMSAAKF-GMHLQAATPKGYEPDASVTKLAEQYGTKLLLTNDPLEAAHGGNVLITTWISMGREEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLPKPEEVDDEVFYSPRSLVFPEAENRKWTIMAVMVSLLTDYSPQ

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.899 to 2be9A TM-score=0.922 to native SCOP code=c.78.1.1	TM-score=0.899 to 2be9A TM-score=0.922 to native SCOP code=c.78.1.1	TM-score=0.950 to 1ml4A TM-score=1.000 to native SCOP code=c.78.1.1	TM-score=0.950 to 1ml4A TM-score=1.000 to native SCOP code=c.78.1.1	TM-score=0.899 to 2be9A TM-score=0.922 to native SCOP code=c.78.1.1

Experimental Structure

Download 1ekxA

SCOP code=c.78.1.1