Template-based Modeling Results for PTGCB_ECOLI

Submitted Primary Sequence

>Length 477
MFKNAFANLQKVGKSLMLPVSVLPIAGILLGVGSANFSWLPAVVSHVMAEAGGSVFANMPLIFAIGVALGFTNNDGVSALAAVVAYGIMVKTMAVVAPLVLHLPAEEIASKHLADTGVLGGIISGAIAAYMFNRFYRIKLPEYLGFFAGKRFVPIISGLAAIFTGVVLSFIWPPIGSAIQTFSQWAAYQNPVVAFGIYGFIERCLVPFGLHHIWNVPFQMQIGEYTNAAGQVFHGDIPRYMAGDPTAGKLSGGFLFKMYGLPAAAIAIWHSAKPENRAKVGGIMISAALTSFLTGITEPIEFSFMFVAPILYIIHAILAGLAFPICILLGMRDGTSFSHGLIDFIVLSGNSSKLWLFPIVGIGYAIVYYTIFRVLIKALDLKTPGREDATEDAKATGTSEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVVAGSGVQAIFGTKSDNLKTEMDEYIRNH
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MFKNAFANLQKVGKSLMLPVSVLPIAGILLGVGSANFSWLPAVVSHVMAEAGGSVFANMPLIFAIGVALGFTNNDGVSALAAVVAYGIMVKTMAVVAPLVLHLPAEEIASKHLADTGVLGGIISGAIAAYMFNRFYRIKLPEYLGFFAGKRFVPIISGLAAIFTGVVLSFIWPPIGSAIQTFSQWAAYQNPVVAFGIYGFIERCLVPFGLHHIWNVPFQMQIGEYTNAAGQVFHGDIPRYMAGDPTAGKLSGGFLFKMYGLPAAAIAIWHSAKPENRAKVGGIMISAALTSFLTGITEPIEFSFMFVAPILYIIHAILAGLAFPICILLGMRDGTSFSHGLIDFIVLSGNSSKLWLFPIVGIGYAIVYYTIFRVLIKALDLKTPGREDATEDAKATGTSEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVVAGSGVQAIFGTKSDNLKTEMDEYIRNH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEECCCCCEEHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHCCHHHCEEEEECCEEEEEEEECHHHCCHHHHHHCCCCEEEEECCEEEEEECCCHHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MFKNAFANLQKVGKSLMLPVSVLPIAGILLGVGSANFSWLPAVVSHVMAEAGGSVFANMPLIFAIGVALGFTNNDGVSALAAVVAYGIMVKTMAVVAPLVLHLPAEEIASKHLADTGVLGGIISGAIAAYMFNRFYRIKLPEYLGFFAGKRFVPIISGLAAIFTGVVLSFIWPPIGSAIQTFSQWAAYQNPVVAFGIYGFIERCLVPFGLHHIWNVPFQMQIGEYTNAAGQVFHGDIPRYMAGDPTAGKLSGGFLFKMYGLPAAAIAIWHSAKPENRAKVGGIMISAALTSFLTGITEPIEFSFMFVAPILYIIHAILAGLAFPICILLGMRDGTSFSHGLIDFIVLSGNSSKLWLFPIVGIGYAIVYYTIFRVLIKALDLKTPGREDATEDAKATGTSEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVVAGSGVQAIFGTKSDNLKTEMDEYIRNH
423201200130030000000000000000000111111001000200120000001100000000000010223110000000000000200000021123111220022212221000000000000000120020201300011213200000000000000012121121002002100200131210000001000110000000000000000010120111102000000110010132001010000020000000000012003331122000000000000011101100100000000000000000000000001000010010011000000011132220100000000000000000100021021312243322331222122310100021011332021010000001020112330122003401010000123001000013032012202311544
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MFKNAFANLQKVGKSLMLPVSVLPIAGILLGVGSANFSWLPAVVSHVMAEAGGSVFANMPLIFAIGVALGFTNNDGVSALAAVVAYGIMVKTMAVVAPLVLHLPAEEIASKHLADTGVLGGIISGAIAAYMFNRFYRIKLPEYLGFFAGKRFVPIISGLAAIFTGVVLSFIWPPIGSAIQTFSQWAAYQNPVVAFGIYGFIERCLVPFGLHHIWNVPFQMQIGEYTNAAGQVFHGDIPRYMAGDPTAGKLSGGFLFKMYGLPAAAIAIWHSAKPENRAKVGGIMISAALTSFLTGITEPIEFSFMFVAPILYIIHAILAGLAFPICILLGMRDGTSFSHGLIDFIVLSGNSSKLWLFPIVGIGYAIVYYTIFRVLIKALDLKTPGREDATEDAKATGTSEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVVAGSGVQAIFGTKSDNLKTEMDEYIRNH
1	SPARKS	1iba_	0.987	0.161	2.238	threading_1	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVVAGSGVQAIFGTKSDNLKTEMDEYIRNF
2	PROSPECT2	3a6pA1	0.074	0.874	1.963	threading_2	AMDQVNALCEQLVKAVTVQRYRLEAPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLS---KQGETQTELVMFILLRLAEDV----------VTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAA-LNTLAGYIDWVSMSHITAENCKLLE-ILCLLLNEQEL----------QLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSGLVEKHYVFLKRLCQVLCALGNQFGKYLESFLAFTTHPSQFLRSS-TQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSS--RAQQGEV----------MRLACRLDPKTS----------------------FQMAGEWLKYQLSTF
3	PPA-I	3bp3A	0.861	0.166	1.999	threading_3	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTSEAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVVAGSGVQAIFGTKSDNLKTEDEYIRN--
4	HHPRED-l	3bp3_A	1.000	0.166	5.768	threading_4	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTSE-APALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVVAGSGVQAIFGTKSDNLKTE-DEYIRN-
5	PROSPECT2	1b3ua	0.081	0.956	1.949	threading_5	VLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFVKAELRQYFRNLCSDDTPMVRRA--------AASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEGIRQLSQSLLPAIVVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMEVCGQDITTKHMLPTVPVANVRFNVAKSLQKI-GPILDNSTLQSEVKPIL------------EKLTQDQDVDVKYFAQEALTVA
6	HHPRED-g	3bp3_A	1.000	0.166	4.821	threading_6	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTSE-APALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVVAGSGVQAIFGTKSDNLKTE-DEYIRN-
7	SAM-T99	1ibaA	0.987	0.161	4.121	threading_7	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVVAGSGVQAIFGTKSDNLKTEMDEYIRNF
8	SPARKS	3qnqa	0.155	0.662	1.165	threading_8	GYSEFMASL----------------------FGKN--------WNVALGYPVSATFNIMALIAVFGIAYRLGEYYKASGALSLVTFLLA---TPFQVAYIMPGTKESILVDGVIPAGLFVAMIIAIISTEIYRFLVQIKMPEIFEHTTFGSIHNVVGKL---------------LQEPLSILG------ASLWGAVIAVILVHVLWACGIH-----------GAMSPIWLSLMDQNRIAFQAGQDVPNTITAQFFDLWIYMLALVVGMLLFARSQQLKSLGRLSIAPGI--F--NINEMVTFGMLLLIPFIVVPVVLTIVSYFAME--WGLVARPSGAAILFSGYLGSGGKISGVILQLVNFALAVIYLPFLKIWDKQK-IA---EEKGEA--------------------------------------------------------------------------------------
9	SPARKS	3ipja	0.262	0.176	1.917	threading_9	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SNANKYNKIANELIKIIG-EDNIISITHCATRLRVMVKDREIINDKKVEKVEVKGVFFTSGQYQIILGTGVNKVYAEVEKMGLKT
10	PROSPECT2	1jdha	0.072	0.931	1.901	threading_10	VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFALVKMLGSPVDSVLFYAITTLHNLLLHGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY---------------GNQESKLIILAGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD----------INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQFVEGVRMEEIVEGCTGAARDVHNRIVIRGLNTIPLFVQLRVAAGVLCELAQDKEA--AEAIEAEGATAPLTE------LLHSRNEGVATYAAAVLFRS

Predicted Tertiary Structure


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TM-score=0.869 to 1b3uA SCOP code=a.118.1.2	TM-score=0.571 to 1ibaA SCOP code=d.95.1.1	TM-score=0.579 to 1xm9A SCOP code=a.118.1.24	TM-score=0.380 to 1f9nB SCOP code=a.4.5.3	TM-score=0.504 to 2q6hA SCOP code=f.54.1.1