Template-based Modeling Results for PSS_ECOLI

Submitted Primary Sequence

>Length 451
MLSKFKRNKHQQHLAQLPKISQSVDDVDFFYAPADFRETLLEKIASAKQRICIVALYLEQDDGGKGILNALYEAKRQRPELDVRVLVDWHRAQRGRIGAAASNTNADWYCRMAQENPGVDVPVYGVPINTREALGVLHFKGFIIDDSVLYSGASLNDVYLHQHDKYRYDRYHLIRNRKMSDIMFEWVTQNIMNGRGVNRLDDVNRPKSPEIKNDIRLFRQELRDAAYHFQGDADNDQLSVTPLVGLGKSSLLNKTIFHLMPCAEQKLTICTPYFNLPAILVRNIIQLLREGKKVEIIVGDKTANDFYIPEDEPFKIIGALPYLYEINLRRFLSRLQYYVNTDQLVVRLWKDDDNTYHLKGMWVDDKWMLITGNNLNPRAWRLDLENAILIHDPQLELAPQREKELELIREHTTIVKHYRDLQSIADYPVKVRKLIRRLRRIRIDRLISRIL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLSKFKRNKHQQHLAQLPKISQSVDDVDFFYAPADFRETLLEKIASAKQRICIVALYLEQDDGGKGILNALYEAKRQRPELDVRVLVDWHRAQRGRIGAAASNTNADWYCRMAQENPGVDVPVYGVPINTREALGVLHFKGFIIDDSVLYSGASLNDVYLHQHDKYRYDRYHLIRNRKMSDIMFEWVTQNIMNGRGVNRLDDVNRPKSPEIKNDIRLFRQELRDAAYHFQGDADNDQLSVTPLVGLGKSSLLNKTIFHLMPCAEQKLTICTPYFNLPAILVRNIIQLLREGKKVEIIVGDKTANDFYIPEDEPFKIIGALPYLYEINLRRFLSRLQYYVNTDQLVVRLWKDDDNTYHLKGMWVDDKWMLITGNNLNPRAWRLDLENAILIHDPQLELAPQREKELELIREHTTIVKHYRDLQSIADYPVKVRKLIRRLRRIRIDRLISRIL
CCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCEEEEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCEEEECCCCCHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEECCCEEEECCCCCCHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHCEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLSKFKRNKHQQHLAQLPKISQSVDDVDFFYAPADFRETLLEKIASAKQRICIVALYLEQDDGGKGILNALYEAKRQRPELDVRVLVDWHRAQRGRIGAAASNTNADWYCRMAQENPGVDVPVYGVPINTREALGVLHFKGFIIDDSVLYSGASLNDVYLHQHDKYRYDRYHLIRNRKMSDIMFEWVTQNIMNGRGVNRLDDVNRPKSPEIKNDIRLFRQELRDAAYHFQGDADNDQLSVTPLVGLGKSSLLNKTIFHLMPCAEQKLTICTPYFNLPAILVRNIIQLLREGKKVEIIVGDKTANDFYIPEDEPFKIIGALPYLYEINLRRFLSRLQYYVNTDQLVVRLWKDDDNTYHLKGMWVDDKWMLITGNNLNPRAWRLDLENAILIHDPQLELAPQREKELELIREHTTIVKHYRDLQSIADYPVKVRKLIRRLRRIRIDRLISRIL
5534243332120023013022221101002102201310031023023100000000121300200020012034433301000001112122221222223111310020023222010000001010221111100000001110000000011210223332221110001033002001200110012031222133232232331221032013203312232323232320000111222422200200020022032201000110001120020012003312201000014211212213222210000001001100220011021123233110100213320000100001220000101102010021101100001133230022123103202421221322211211231123022002201201022102313
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLSKFKRNKHQQHLAQLPKISQSVDDVDFFYAPADFRETLLEKIASAKQRICIVALYLEQDDGGKGILNALYEAKRQRPELDVRVLVDWHRAQRGRIGAAASNTNADWYCRMAQENPGVDVPVYGVPINTREALGVLHFKGFIIDDSVLYSGASLNDVYLHQHDKYRYDRYHLIRNRKMSDIMFEWVTQNIMNGRGVNRLDDVNRPKSPEIKNDIRLFRQELRDAAYHFQGDADNDQLSVTPLVGLGKSSLLNKTIFHLMPCAEQKLTICTPYFNLPAILVRNIIQLLREGKKVEIIVGDKTANDFYIPEDEPFKIIGALPYLYEINLRRFLSRLQYYVNTDQLVVRLWKDDDNTYHLKGMWVDDKWMLITGNNLNPRAWRLDLENAILIHDPQLELAPQREKELELIREHTTIVKHYRDLQSIADYPVKVRKLIRRLRRIRIDRLISRIL
1	MUSTER	3hsiB	0.494	0.982	2.962	threading_1	-IN--KTKRAEQNLNNLPFLALQAEQIEFLGSSAEFKTQIIELIRNAKKRIYVTALYWQKDEAGQEILDEIYRVKQENPHLDVKVLIDWHRAQRNLAEKS--ATNADWYCEQRQTYQLPDPNFFGVPINTREVFGVLHVKGFVFDDTVLYSGASINNVYLHQFEKYRYDRYQKITHAELADSVNFINDYLL-DFSAVYPLDVTNRPRTKEIRGNIRAYRKDLAQGEYSLKSAVLPNVLSVSPLFGLGAGNELNQVIEDLFLQVQKKLVICTPYFNFPRTLQHKIATLLENGKRVEIIVGDKVANDFYIPPEQPFKA-GALPYLYESNLRRFCEKFETQIESGQLVVRLWRDGDNTYHLKGVWVDDRYILLTGNNLNPRAWRLDAENGLLIYDPQQQLLAQVEKEQNQIRQHTKVLKHYTELEELNQYPEPVQKLLKKFARIKADKLVKIL-
2	SPARKS	3hsia	0.483	0.973	8.408	threading_2	----NKTKRAEQNLNNLPFLALQAEQIEFLGSSAEFKTQIIELIRNAKKRIYVTALYWQKDEAGQEILDEIYRVKQENPHLDVKVLIDWHRAQRNLLAT-----NADWYCEQRQTYQLPDPNFFGVPINTREVFGVLHVKGFVFDDTVLYSGASINNVYLHQFEKYRYDRYQKITHAELAD-SVNFINDYLLDFSAVYPLDVTNRPRTKEIRGNIRAYRKDLAQEYSLKSAVKLPNVLSVSPLGLGASGNELNQVIEDLFLQVQKKLVICTPYFNFPRTLQHKIATLLENGKRVEIIVGDKVANDFYIPPEQPFKAGA-LPYLYESNLRRFCEKFETQIESGQLVVRLWRDGDNTYHLKGVWVDDRYILLTGNNLNPRAWRLDAENGLLIYDPQQQLLAQVEKEQNQIRQHTKVLKHYTELEELNQYPEPVQKLLKKFARIKADKLVKIL-
3	PROSPECT2	3hsiA	0.466	0.976	4.645	threading_3	N----KTKRAEQNLNNLPFLALQAEQIEFLGSSAEFKTQIIELIRNAKKRIYVTALYWQKDEAGQEILDEIYRVKQENPHLDVKVLIDWHRAQRNLLAT----NADWYCEQRQTYQLPDDPNFFGVPINTREVFGVLHVKGFVFDDTVLYSGASINNVYLHQFEKYRYDRYQKITHAELADSV-NFINDYLLDFSAVYPLDVTNRPRTKEIRGNIRAYRKDLAQNGEYSLKSAPNVLSVSPLFGLGASGNELNQVIEDLFLQVQKKLVICTPYFNFPRTLQHKIATLLENGKRVEIIVGDKVANDFYIPPEQPFK-AGALPYLYESNLRRFCEKFETQIESGQLVVRLWRDGDNTYHLKGVWVDDRYILLTGNNLNPRAWRLDAENGLLIYDPQQQLLAQVEKEQNQIRQHTKVLKHYTELEELNQYPEPVQKLLKKFARIKADKLVKI-L
4	PPA-I	3hsiB	0.466	0.984	4.230	threading_4	---INKTKRAEQNLNNLPFLALQAEQIEFLGSSAEFKTQIIELIRNAKKRIYVTALYWQKDEAGQEILDEIYRVKQENPHLDVKVLIDWHRAQRNLAEKSATNADWYCEQRQTYQLPDD-PNFFGVPINTREVFGVLHVKGFVFDDTVLYSGASINNVYLHQFEKYRYDRYQKITHAELADSVNFINDYLL-DFSAVYPLDVTNRPRTKEIRGNIRAYRKDLAQNGEYSLKSAPNVLSVSPLFGLGASGNELNQVIEDLFLQVQKKLVICTPYFNFPRTLQHKIATLLENGKRVEIIVGDKVANDFYIPPEQPFKA-GALPYLYESNLRRFCEKFETQIESGQLVVRLWRDGDNTYHLKGVWVDDRYILLTGNNLNPRAWRLDAENGLLIYDPQQQLLAQVEKEQNQIRQHTKVLKHYTELEELNQYPEPVQKLLKKFARIKADKLVKIL-
5	HHPRED-l	3hsi_A	0.493	0.971	9.519	threading_5	----NKTKRAEQNLNNLPFLALQAEQIEFLGSSAEFKTQIIELIRNAKKRIYVTALYWQKDEAGQEILDEIYRVKQENPHLDVKVLIDWHRAQRNLL-----ATNADYCEQRQTYQLPDDPNFFGVPINTREVFGVLHVKGFVFDDTVLYSGASINNVYLHQFEKYRYDRYQKITHAELADS-VNFINDYLLDFSAVYPLDVTNRPRTKEIRGNIRAYRKDLQNGEYSLKSAKLPNVLSVSPLFGLGSGNELNQVIEDLFLQVQKKLVICTPYFNFPRTLQHKIATLLENGKRVEIIVGDKVANDFYIPPEQPFK-AGALPYLYESNLRRFCEKFETQIESGQLVVRLWRDGDNTYHLKGVWVDDRYILLTGNNLNPRAWRLDAENGLLIYDPQQQLLAQVEKEQNQIRQHTKVLKHYTELEELNQYPEPVQKLLKKFARIKADKLVK-I-
6	HHPRED-g	3hsi_A	0.507	0.971	9.101	threading_6	--NKTKRA-E-QNLNNLPFLALQAEQIEFLGSSAEFKTQIIELIRNAKKRIYVTALYWQKDEAGQEILDEIYRVKQENPHLDVKVLIDWHRAQRNLL-----ATNADWYCEQRQTY-QLPDDFFGVPINTREVFGVLHVKGFVFDDTVLYSGASINNVYLHQFEKYRYDRYQKITHAELADS-VNFINDYLLDFSAVYPLDVTNRPRTKEIRGNIRAYRKDLQNGEYSLKSAKLPNVLSVSPLFGLGSGNELNQVIEDLFLQVQKKLVICTPYFNFPRTLQHKIATLLENGKRVEIIVGDKVANDFYIPPEQPFK-AGALPYLYESNLRRFCEKFETQIESGQLVVRLWRDGDNTYHLKGVWVDDRYILLTGNNLNPRAWRLDAENGLLIYDPQQQLLAQVEKEQNQIRQHTKVLKHYTELEELNQYPEPVQKLLKKFARIKADKLVK-IL
7	SP3	3hsia	0.494	0.973	8.219	threading_7	----NKTKRAEQNLNNLPFLALQAEQIEFLGSSAEFKTQIIELIRNAKKRIYVTALYWQKDEAGQEILDEIYRVKQENPHLDVKVLIDWHRAQRNLLAT-----NADWYCEQRQTYQLPDDPFFGVPINTREVFGVLHVKGFVFDDTVLYSGASINNVYLHQFEKYRYDRYQKITHAELAD-SVNFINDYLLDFSAVYPLDVTNRPRTKEIRGNIRAYRKDLAQNGEYSSAVKLPNVLSVSPLFGLGASGELNQVIEDLFLQVQKKLVICTPYFNFPRTLQHKIATLLENGKRVEIIVGDKVANDFYIPPEQPFKAGA-LPYLYESNLRRFCEKFETQIESGQLVVRLWRDGDNTYHLKGVWVDDRYILLTGNNLNPRAWRLDAENGLLIYDPQQQLLAQVEKEQNQIRQHTKVLKHYTELEELNQYPEPVQKLLKKFARIKADKLVKIL-
8	SAM-T99	3hsiB	0.478	0.965	9.823	threading_8	--------RAEQNLNNLPFLALQAEQIEFLGSSAEFKTQIIELIRNAKKRIYVTALYWQKDEAGQEILDEIYRVKQENPHLDVKVLIDWHRAQRNLAENADWYCEQRQTYQLPDDPNF-----FGVPINTREVFGVLHVKGFVFDDTVLYSGASINNVYLHQFEKYRYDRYQKITHAELAD-SVNFINDYLLDFSAVYPLDVTNRPRTKEIRGNIRAYRKDLAQNGEYSLKVKLPNVLSVSPLFGLGASGNLNQVIEDLFLQVQKKLVICTPYFNFPRTLQHKIATLLENGKRVEIIVGDKVANDFYIPPEQP-FKAGALPYLYESNLRRFCEKFETQIESGQLVVRLWRDGDNTYHLKGVWVDDRYILLTGNNLNPRAWRLDAENGLLIYDPQQQLLAQVEKEQNQIRQHTKVLKHYTELEELNQYPEPVQKLLKKFARIKADKLVKIL-
9	MUSTER	2ze9A	0.143	0.914	1.244	threading_9	TPPTPHLDAIERSLRDTPGLETDGNRLDLLQTTRRLLDKMTRNIADARHTVDISSLAFPNGGFEDAVVDGLKASVAAGHSPRVRILVGAAPI--YHLNVVPSRYRDELIGKLGAAAGKVTLNVASMTTSKTSLS-WNASKLLVVDGKTAITGGNGKDDYLDTAHPV-SDVDMALSGPAARSAGKYLDTLWDWTCRNASDPAKVWLATSNGA-SCMPSMEQDEAGSAPA--EPTGDVPVIAVGGLGVGIKNPEENALRSLIASARSHVEISQPLPRYDIRTYDTLAGKLAAGVKVRIVVSDPANRGAVGSGGYSQKSLDEISDTLRTRLVALTGDNEKASRALCGNLQLASFKPYALHHKLVSVDDSAFYIGSKNLYPAW--LQ-DFGYIVESP-AAAQQLKTELLDPEWKYSQQAAA-----TPAGCP-----------------------
10	SPARKS	1f0ia	0.142	0.920	2.539	threading_10	KLDGSAADPSDWLLQTPGCWGDDKCADR--VGTKRLLAKMTENIGNATRTVDISTLAFPNGAFQDAIVAGLKESAAKGNSLKVRILVGAAPHMNGIPSK----YRDKLTAKLGKAAENITLNVAMTTSKTA--FSWNHSKILVVDGQSALTGGNSWKDDYLDTTHPVSDVDLALTGPAAGSAGRYLDTLWTWTCKNKSNIASVWFAASGNAGCMPTMHKDTNPKASPATDVDPKSTFRPDLPTASDTKVNPEESALRALVASAKGHIEISPPLPRYDIRLYDALAAKMAAGVKVRIVVSDPANRGYSQIKSLSEISDTLRNRLQQAAKTAMCSNLQLATFRSSPNGKWADGHPYAQHHKLVSVDSSTFYIGSKNLYP-SW---LQDFGYIVESPEAAKQLDAKLLDPQWKYSQETATVDYARGICGA------------------------

Predicted Tertiary Structure


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TM-score=0.625 to 1xdpA SCOP code=a.7.15.1	TM-score=0.625 to 1xdpA SCOP code=a.7.15.1	TM-score=0.627 to 1xdpA SCOP code=a.7.15.1	TM-score=0.627 to 1xdpA SCOP code=a.7.15.1	TM-score=0.625 to 1xdpA SCOP code=a.7.15.1