Template-based Modeling Results for PRPD_ECOLI


  Submitted Primary Sequence

>Length 483
MSAQINNIRPEFDREIVDIVDYVMNYEISSKVAYDTAHYCLLDTLGCGLEALEYPACKKLLGPIVPGTVVPNGVRVPGTQFQLDPVQAAFNIGAMIRWLDFNDTWLAAEWGHPSDNLGGILATADWLSRNAVASGKAPLTMKQVLTAMIKAHEIQGCIALENSFNRVGLDHVLLVKVASTAVVAEMLGLTREEILNAVSLAWVDGQSLRTYRHAPNTGTRKSWAAGDATSRAVRLALMAKTGEMGYPSALTAPVWGFYDVSFKGESFRFQRPYGSYVMENVLFKISFPAEFHSQTAVEAAMTLYEQMQAAGKTAADIEKVTIRTHEACIRIIDKKGPLNNPADRDHCIQYMVAIPLLFGRLTAADYEDNVAQDKRIDALREKINCFEDPAFTADYHDPEKRAIANAITLEFTDGTRFEEVVVEYPIGHARRRQDGIPKLVDKFKINLARQFPTRQQQRILEVSLDRARLEQMPVNEYLDLYVI
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSAQINNIRPEFDREIVDIVDYVMNYEISSKVAYDTAHYCLLDTLGCGLEALEYPACKKLLGPIVPGTVVPNGVRVPGTQFQLDPVQAAFNIGAMIRWLDFNDTWLAAEWGHPSDNLGGILATADWLSRNAVASGKAPLTMKQVLTAMIKAHEIQGCIALENSFNRVGLDHVLLVKVASTAVVAEMLGLTREEILNAVSLAWVDGQSLRTYRHAPNTGTRKSWAAGDATSRAVRLALMAKTGEMGYPSALTAPVWGFYDVSFKGESFRFQRPYGSYVMENVLFKISFPAEFHSQTAVEAAMTLYEQMQAAGKTAADIEKVTIRTHEACIRIIDKKGPLNNPADRDHCIQYMVAIPLLFGRLTAADYEDNVAQDKRIDALREKINCFEDPAFTADYHDPEKRAIANAITLEFTDGTRFEEVVVEYPIGHARRRQDGIPKLVDKFKINLARQFPTRQQQRILEVSLDRARLEQMPVNEYLDLYVI
CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCHHCHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCHHHHCCCCCHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEECHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHCCCHHHHHHHHCCEEEECCCCCHHHCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHCCCHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MSAQINNIRPEFDREIVDIVDYVMNYEISSKVAYDTAHYCLLDTLGCGLEALEYPACKKLLGPIVPGTVVPNGVRVPGTQFQLDPVQAAFNIGAMIRWLDFNDTWLAAEWGHPSDNLGGILATADWLSRNAVASGKAPLTMKQVLTAMIKAHEIQGCIALENSFNRVGLDHVLLVKVASTAVVAEMLGLTREEILNAVSLAWVDGQSLRTYRHAPNTGTRKSWAAGDATSRAVRLALMAKTGEMGYPSALTAPVWGFYDVSFKGESFRFQRPYGSYVMENVLFKISFPAEFHSQTAVEAAMTLYEQMQAAGKTAADIEKVTIRTHEACIRIIDKKGPLNNPADRDHCIQYMVAIPLLFGRLTAADYEDNVAQDKRIDALREKINCFEDPAFTADYHDPEKRAIANAITLEFTDGTRFEEVVVEYPIGHARRRQDGIPKLVDKFKINLARQFPTRQQQRILEVSLDRARLEQMPVNEYLDLYVI
533323222242231011002000313211320020011000000000021032210220001013212232102010132302110000000000100201210110310000110000000021002102222322121310010001001000000132111421011000000000000031021223100100000011010011122223211221000000001001001003212211311012321001100131211212322221001200021110001001000200120032033223212101101020030003102331222121101000100000000113010220223202133011014202012132112312123422111001010232220210002112121423331132002102200232022310220020011123033121320111113
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMSAQINNIRPEFDREIVDIVDYVMNYEISSKVAYDTAHYCLLDTLGCGLEALEYPACKKLLGPIVPGTVVPNGVRVPGTQFQLDPVQAAFNIGAMIRWLDFNDTWLAAEWGHPSDNLGGILATADWLSRNAVASGKAPLTMKQVLTAMIKAHEIQGCIALENSFNRVGLDHVLLVKVASTAVVAEMLGLTREEILNAVSLAWVDGQSLRTYRHAPNTGTRKSWAAGDATSRAVRLALMAKTGEMGYPSALTAPVWGFYDVSFKGESFRFQRPYGSYVMENVLFKISFPAEFHSQTAVEAAMTLYEQMQAAGKTAADIEKVTIRTHEACIRIIDKKGPLNNPADRDHCIQYMVAIPLLFGRLTAADYEDNVAQDKRIDALREKINCFEDPAFTADYHDPEKRAIANAITLEFTDGTRFEEVVVEYPIGHARRRQDGIPKLVDKFKINLARQFPTRQQQRILEVSLDRARLEQMPVNEYLDLYVI
1MUSTER1szqA0.9440.9543.062threading_1----------EFDREIVDIVDYV-NYEISSKVAYDTAHYCLLDTLGCGLEALEYPACKKLLGPIVPGTVVPNGVRVPGTQFQLDPVQAAFNIGA-IRWLDFNDTWLAAEWGHPSDNLGGILATADWLSRNAVASGKAPLT--KQVLTAIKAHEIQGCIALENSFNRVGLD-HVLLVKVASTAVVAELGLTREEILNAVSLAWVDGQSLRTYRHAPNTGTRKSWAAGDATSRAVRLAL-AKTGEGY-PSALTAPVWGFYDVSFKGESFRFQRPYGSYV-ENVLFKISFPAEFHSQTAVEAATLYEQQ--AAGKTAADIEKVTIRTHEACIRIIDKKGPLNNPADRDHCIQY-VAIPLLFGRLTAADYEDNVAQDKRIDALREKINCFEDPAFTADYHDPEKRAIANAITLEFTDGTRFEEVVVEYPIGHARRRQDGIPKLVDKFKINLARQFPTRQQQRILEVSLDRARLEQ-PVNEYLDLYVI
2SPARKS1szqa0.9540.9549.237threading_2----------EFDREIVDIVDY-VNYEISSKVAYDTAHYCLLDTLGCGLEALEYPACKKLLGPIVPGTVVPNGVRVPGTQFQLDPVQAAFNIG-AIRWLDFNDTWLAAEWGHPSDNLGGILATADWLSRNAVASGKAPLT--KQVLTAIKAHEIQGCIALENSFNRVGLDHVLLVKVASTAVVA-ELGLTREEILNAVSLAWVDGQSLRTYRHAPNTGTRKSWAAGDATSRAVRLA-LAKTGEGY-PSALTAPVWGFYDVSFKGESFRFQRPYGSYV-ENVLFKISFPAEFHSQTAVEAATLYEQQAA--GKTAADIEKVTIRTHEACIRIIDKKGPLNNPADRDHCIQYV-AIPLLFGRLTAADYEDNVAQDKRIDALREKINCFEDPAFTADYHDPEKRAIANAITLEFTDGTRFEEVVVEYPIGHARRRQDGIPKLVDKFKINLARQFPTRQQQRILEVSLDRARLE-QPVNEYLDLYVI
3PROSPECT21szqA0.8870.9544.507threading_3----------EFDREIVDIVDY-VNYEISSKVAYDTAHYCLLDTLGCGLEALEYPACKKLLGPIVPGTVVPNGVRVPGTQFQLDPV-QAAFNIGAIRWLDFNDTWLAAEWGHPSDNLGGILATADWLSRNAVASGKAPLT--KQVLTAIKAHEIQGCIALENSFNRVGLDHVL-LVKVASTAVVAELGLTREEILNAVSLAWVDGQSLRTYRHAPNTGTRK-SWAAGDATSRAVRLALAKTGEGYPSALT-APVWGFYDVSFKGESFRFQRPYGSYV-ENVLFKISFPAEFHSQTAVEAATLYEQQ--AAGKTAADIEKVTIRTHEACIRIIDKKGPLNNPADRDHCIQY-VAIPLLFGRLTAADYEDNVAQDKRIDALREKINCFEDPAFTADYHDPEKRAIANAITLEFTDGTRFEEVVVEYPIGHARRRQDGIPKLVDKFKINLARQFPTRQQQRILEVSLDRARLEQ-PVNEYLDLYVI
4PPA-I1szqA0.9330.9543.577threading_4----------EFDREIVDIVDYV-NYEISSKVAYDTAHYCLLDTLGCGLEALEYPACKKLLGPIVPGTVVPNGVRVPGTQFQLDPVQAAFNIGA-IRWLDFNDTWLAAEWGHPSDNLGGILATADWLSRNAVASGKAPLT--KQVLTAIKAHEIQGCIALENSFNRVGLDH-VLLVKVASTAVVAELGLTREEILNAVSLAWVDGQSLRTYRHAPNTGTRKSWAAGDATSRAVRLAL-AKTGEGYPSAL-TAPVWGFYDVSFKGESFRFQRPYGSYVE-NVLFKISFPAEFHSQTAVEAATLYEQQ--AAGKTAADIEKVTIRTHEACIRIIDKKGPLNNPADRDHCIQY-VAIPLLFGRLTAADYEDNVAQDKRIDALREKINCFEDPAFTADYHDPEKRAIANAITLEFTDGTRFEEVVVEYPIGHARRRQDGIPKLVDKFKINLARQFPTRQQQRILEVSLDRARLE-QPVNEYLDLYVI
5HHPRED-l1szq_A1.0000.95210.990threading_5----------EFDREIVDIVDYV-NYEISSKVAYDTAHYCLLDTLGCGLEALEYPACKKLLGPIVPGTVVPNGVRVPGTQFQLDPVQAAFNIGA-IRWLDFNDTWLAAEWGHPSDNLGGILATADWLSRNAVASGKAPLT-KQVLTA-IKAHEIQGCIALENSFNRVGLDHVLLVKVASTAVVAE-LGLTREEILNAVSLAWVDGQSLRTYRHAPNTGTRKSWAAGDATSRAVRLAL-AKTGE-GYPSALTAPVWGFYDVSFKGESFRFQRPYGSYV-ENVLFKISFPAEFHSQTAVEAA-TLYEQ-QAAGKTAADIEKVTIRTHEACIRIIDKKGPLNNPADRDHCIQY-VAIPLLFGRLTAADYEDNVAQDKRIDALREKINCFEDPAFTADYHDPEKRAIANAITLEFTDGTRFEEVVVEYPIGHARRRQDGIPKLVDKFKINLARQFPTRQQQRILEVSLDRARLEQ-PVNEYLDLYV-
6HHPRED-g1szq_A1.0000.9549.454threading_6----------EFDREIVDIVDYV-NYEISSKVAYDTAHYCLLDTLGCGLEALEYPACKKLLGPIVPGTVVPNGVRVPGTQFQLDPVQAAFNIGA-IRWLDFNDTWLAAEWGHPSDNLGGILATADWLSRNAVASGKAPLT-KQVLTA-IKAHEIQGCIALENSFNRVGLDHVLLVKVASTAVVAE-LGLTREEILNAVSLAWVDGQSLRTYRHAPNTGTRKSWAAGDATSRAVRLAL-AKTGE-GYPSALTAPVWGFYDVSFKGESFRFQRPYGSYV-ENVLFKISFPAEFHSQTAVEAA-TLYEQ-QAAGKTAADIEKVTIRTHEACIRIIDKKGPLNNPADRDHCIQY-VAIPLLFGRLTAADYEDNVAQDKRIDALREKINCFEDPAFTADYHDPEKRAIANAITLEFTDGTRFEEVVVEYPIGHARRRQDGIPKLVDKFKINLARQFPTRQQQRILEVSLDRARLEQ-PVNEYLDLYVI
7SP31szqa0.9540.9549.308threading_7----------EFDREIVDIVDY-VNYEISSKVAYDTAHYCLLDTLGCGLEALEYPACKKLLGPIVPGTVVPNGVRVPGTQFQLDPVQAAFNIG-AIRWLDFNDTWLAAEWGHPSDNLGGILATADWLSRNAVASGKAPLT--KQVLTAIKAHEIQGCIALENSFNRVGLDHVLLVKVASTAVVA-ELGLTREEILNAVSLAWVDGQSLRTYRHAPNTGTRKSWAAGDATSRAVRLA-LAKTGEGY-PSALTAPVWGFYDVSFKGESFRFQRPYGSYV-ENVLFKISFPAEFHSQTAVEAATLYEQQAA--GKTAADIEKVTIRTHEACIRIIDKKGPLNNPADRDHCIQYV-AIPLLFGRLTAADYEDNVAQDKRIDALREKINCFEDPAFTADYHDPEKRAIANAITLEFTDGTRFEEVVVEYPIGHARRRQDGIPKLVDKFKINLARQFPTRQQQRILEVSLDRARLE-QPVNEYLDLYVI
8SAM-T991szqA0.9480.9508.602threading_8-------------EFDREIVDIVVNYEISSKVAYDTAHYCLLDTLGCGLEALEYPACKKLLGPIVPGTVVPNGVRVPGTQFQLDPVQAAFNIG-AIRWLDFNDTWLAAEWGHPSDNLGGILATADWLSRNAVASGKAPLT-KQVLTA-IKAHEIQGCIALENSFNRVGLDHVLLVKVASTAVVAEL-GLTREEILNAVSLAWVDGQSLRTYRHAPNTGTRKSWAAGDATSRAVRLAL--AKTGEGYPSALTAPVWGFYDVSFKGESFRFQRPYGS-YVENVLFKISFPAEFHSQTAVEAATLYEQQAA--GKTAADIEKVTIRTHEACIRIIDKKGPLNNPADRDHCIQY-VAIPLLFGRLTAADYEDNVAQDKRIDALREKINCFEDPAFTADYHDPEKRAIANAITLEFTDGTRFEEVVVEYPIGHARRRQDGIPKLVDKFKINLARQFPTRQQQRILEVSLDRARLE-QPVNEYLDLYVI
9MUSTER2hp0A0.1720.8782.470threading_9-------------HFTTKLAEKVVSAAKISQPALKAAQDGVIDTVAAALGGVTEHSVQVALKYVAAT-GGSGDSKLWGVNQRSN-FDAAFVNG-AAHAIDFDDSFPVR-GHPSSSLVPAIFAVGEHVG----------ANGHNCLKSYVLGIEVVATLGRAVGHYLAGWHPSTLGVFGATTAAALLLGADEEQLRNAWGIAASNSCGII-----KNFGTTK-PHTGSAARNGVLSAWLSQ-SFTGCQTVFDDAEGILAYGAQPGPELFNAQKFGTPWIAPGLYKKSWPSCYANHKPLAGLFAIKE----HGLTGQDISHVDVGFLPGVEKPLLYD--PRTTEEAKFSIEANIGAALLDGEVSLASFEIEHLDRPARAA---KKVTRFDPSET----TFSGTTGYTDIVVHTADGKIERRIE--ATPGSLEDP--DDAHLERKFKDCTAWPFG--ESGLLFDRLRSLTADQGIK-----TVQP-
10SPARKS2hp0a0.1680.8767.258threading_10-------------HFTTKLAEKVVSKAKISQPALKAAQDGVIDTVAAALGGVTEHSVQVALKYVAAT-GGSGDSKLWGVNQRSNF-DAAFVN-GAAHAIDFDDSFPVR--GHPSSSVPAIFAVGEH----------VGANGHNCLKSYVLGIEVVATLGRGKGHYLAGWHPTSTGVFGATTAAALLLGADEEQLRNAWGIAASNSCGIIKN------FGTTKPHTGSAARNGVLSAWLS-QSFTGCQTVFDDAEGILAYGAQPGPELFNAQKFGTPWIAPGLYKKSWPSCYANHKPLAGLFAIKE----HGLTGQDISHVDVGFLPGVEKPL--LYDPRTTEEAKFSIEANIGAALLDGEVSLASFEIEHLDRPARAA---KKVTRFDPSET----TFSGTTGYTDIVVHTADGKIERRI--EATPGSLEDP--DDAHLERKFKDCTAWPFG--ESGLLFDRLRSLT--ADQGIKTVQP----

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.976 to 1szqA
TM-score=0.999 to native
SCOP code=e.44.1.1		 TM-score=0.976 to 1szqA
TM-score=0.998 to native
SCOP code=e.44.1.1		 TM-score=0.975 to 1szqA
TM-score=0.998 to native
SCOP code=e.44.1.1		 TM-score=0.976 to 1szqA
TM-score=0.999 to native
SCOP code=e.44.1.1		 TM-score=0.976 to 1szqA
TM-score=0.999 to native
SCOP code=e.44.1.1

  Experimental Structure

Download 1szqA
SCOP code=e.44.1.1