Template-based Modeling Results for PRMB_ECOLI

Submitted Primary Sequence

>Length 310
MDKIFVDEAVNELQTIQDMLRWSVSRFSAANIWYGHGTDNPWDEAVQLVLPSLYLPLDIPEDMRTARLTSSEKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLVPRSPIGELINNKFAGLISKQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRSDLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLKLTRRILGNAADYLADDGVLICEVGNSMVHLMEQYPDVPFTWLEFDNGGDGVFMLTKEQLIAAREHFAIYKD
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDKIFVDEAVNELQTIQDMLRWSVSRFSAANIWYGHGTDNPWDEAVQLVLPSLYLPLDIPEDMRTARLTSSEKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLVPRSPIGELINNKFAGLISKQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRSDLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLKLTRRILGNAADYLADDGVLICEVGNSMVHLMEQYPDVPFTWLEFDNGGDGVFMLTKEQLIAAREHFAIYKD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCEEEECCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCHHHHCCHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCEEEEECCCCCCEEEEEHHHHHHCHHHEEECCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDKIFVDEAVNELQTIQDMLRWSVSRFSAANIWYGHGTDNPWDEAVQLVLPSLYLPLDIPEDMRTARLTSSEKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLVPRSPIGELINNKFAGLISKQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRSDLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLKLTRRILGNAADYLADDGVLICEVGNSMVHLMEQYPDVPFTWLEFDNGGDGVFMLTKEQLIAAREHFAIYKD
4332102201310210220021002101312122131131011100000010021213002212224112211220022002113431100100110200101010143110131110200220021022332210000000000000000220230201000003300100120034122230010020100330342100000000010323102202330311021001222100200120011003103330000010012012002202312020010122120000000210120230012245
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDKIFVDEAVNELQTIQDMLRWSVSRFSAANIWYGHGTDNPWDEAVQLVLPSLYLPLDIPEDMRTARLTSSEKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLVPRSPIGELINNKFAGLISKQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQNIEEHGLIHNVIPIRSDLFRDLPKVQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLKLTRRILGNAADYLADDGVLICEVGNSMVHLMEQYPDVPFTWLEFDNGGDGVFMLTKEQLIAAREHFAIYKD
1	MUSTER	2b3tA	0.261	0.877	2.938	threading_1	-------------MEYQHWLREAISQL--------QASESPRRDAEILLEHVTGRGRTFILAFGETQLTDEQCQQLDALLTRRRD-GEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLPEQP-CRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAGYHDVETCRDYGDNERVTLGRYY--------------
2	SPARKS	1t43a	0.274	0.871	3.991	threading_2	--------------EYQHWLREAISQLQ--------ASESPRRDAEILLEHVTGRGRTFILAFGETQLT-DEQCQQLDALLTRRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARL-PEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA-IKNIHILQSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFIHDVETCRDYGDNERVTLGRY---------------
3	PROSPECT2	1t43A	0.259	0.871	3.664	threading_3	E--------------YQHWLREAISQL--------QASESPRRDAEILLEHVTGRGRTFILAFGETQLTDEQCQQLDALL-TRRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALA-RLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAFILAGYHDVETCRDYGDNERVTLG---------------RY
4	PPA-I	2b3tA	0.265	0.877	4.964	threading_4	-------------MEYQHWLREAISQL--------QASESPRRDAEILLEHVTGRGRTFILAFGETQLTDEQCQQLDALLTRRRD-GEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLPEQ-PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFIHDVETCRDYGDNERVTLGRYY--------------
5	HHPRED-l	2b3t_A	0.268	0.877	3.828	threading_5	-------------MEYQHWLREAISQLQAS--------ESPRRDAEILLEHVTGRGRTFILAFGETQLTDEQCQQLDALLTRR-RDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVQAFILAGYHTCRDYGDNERVTLGRYY--------------
6	HHPRED-g	2b3t_A	0.265	0.877	3.718	threading_6	-------------MEYQHWLREAISQLQAS--------ESPRRDAEILLEHVTGRGRTFILAFGETQLTDEQCQQLDALL-TRRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALAR-LPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAGYHDVETCRDYGDNERVTLGRYY--------------
7	SP3	1nv8a	0.253	0.868	4.015	threading_7	-------------RKIWSLIRDCSGKLE-------GVTETSVLEVLLIVSRVLGIRKEDLFL-KDLGVSPTEEKRILELVEKRA-SGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKFASIEMILSNPPYVKSSAH--LPKDVLFEPPEALFGGEDGLDFYREFFGR---YDTSGKIVLMEIGEDQVEELKKIVS-DTVFLKDSAGKYRFLLLNRRSS------------
8	SAM-T99	2b3tA	0.269	0.874	6.328	threading_8	-------------MEYQHWLREAISQLQAS--------ESPRRDAEILLEHVTGRGRTFILAFGETQLTDEQCQQLDALLTRR-RDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARL-PEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKN-IHILQSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAGYHDVETCRDYGDNERVTLGRY---------------
9	MUSTER	1sg9A	0.246	0.877	2.878	threading_9	---------SGAERKIWSLIRDCSGKLEG-------VTETSVLEVLLIVSRVLGIRKEDLFLK-DLGVSPTEEKRILELVEKRAS-GYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKSIEMILSNPPYVKSSAH--LPKDVLFEPPEALFGGEDGLDFYREFFGRY---DTSGKIVLMEIGEDQVEELKKIVS-DTVFLKDSAGKYRFLLLNRRS-------------
10	SPARKS	1nv8a	0.253	0.868	3.872	threading_10	-------------RKIWSLIRDCSGKLE-------GVTETSVLEVLLIVSRVLGIRKEDLFL-KDLGVSPTEEKRILELVEKRA-SGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEASIEMILSNPPYVKSSAH--LPKDVLFEPPEALFGGEDGLDFYREFFGR---YDTSGKIVLMEIGEDQVEELKKI-VSDTVFLKDSAGKYRFLLLNRRSS------------

Predicted Tertiary Structure


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TM-score=0.908 to 2b3tA SCOP code=c.66.1.30	TM-score=0.901 to 2b3tA SCOP code=c.66.1.30	TM-score=0.875 to 2b3tA SCOP code=c.66.1.30	TM-score=0.880 to 2b3tA SCOP code=c.66.1.30	TM-score=0.893 to 2b3tA SCOP code=c.66.1.30