Template-based Modeling Results for PRMA_ECOLI

Submitted Primary Sequence

>Length 293
MPWIQLKLNTTGANAEDLSDALMEAGAVSITFQDTHDTPVFEPLPGETRLWGDTDVIGLFDAETDMNDVVAILENHPLLGAGFAHKIEQLEDKDWEREWMDNFHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTTSLCLQWLDSLDLTGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRDNAERNGVSDRLELYLPKDQPEEMKADVVVANILAGPLRELAPLISVLPVSGGLLGLSGILASQAESVCEAYADSFALDPVVEKEEWCRITGRKN
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MPWIQLKLNTTGANAEDLSDALMEAGAVSITFQDTHDTPVFEPLPGETRLWGDTDVIGLFDAETDMNDVVAILENHPLLGAGFAHKIEQLEDKDWEREWMDNFHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTTSLCLQWLDSLDLTGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRDNAERNGVSDRLELYLPKDQPEEMKADVVVANILAGPLRELAPLISVLPVSGGLLGLSGILASQAESVCEAYADSFALDPVVEKEEWCRITGRKN
CCEEEEEEEECHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHCCCEEECCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEEEEECCEEEEEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MPWIQLKLNTTGANAEDLSDALMEAGAVSITFQDTHDTPVFEPLPGETRLWGDTDVIGLFDAETDMNDVVAILENHPLLGAGFAHKIEQLEDKDWEREWMDNFHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTTSLCLQWLDSLDLTGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRDNAERNGVSDRLELYLPKDQPEEMKADVVVANILAGPLRELAPLISVLPVSGGLLGLSGILASQAESVCEAYADSFALDPVVEKEEWCRITGRKN
43101020202221021002002301010010212332312222223231112000000023322131002002322222221202011033320121013202102001100000113322233101000110001111111000000100121132221000000000000000130101200000002200200220034121212010011423344220000000000000220021003102220000000002210310020023101011112332001010235
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MPWIQLKLNTTGANAEDLSDALMEAGAVSITFQDTHDTPVFEPLPGETRLWGDTDVIGLFDAETDMNDVVAILENHPLLGAGFAHKIEQLEDKDWEREWMDNFHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTTSLCLQWLDSLDLTGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRDNAERNGVSDRLELYLPKDQPEEMKADVVVANILAGPLRELAPLISVLPVSGGLLGLSGILASQAESVCEAYADSFALDPVVEKEEWCRITGRKN
1	MUSTER	2nxeA	0.324	0.863	2.475	threading_1	M--WVYRLKGTLEALDPILPGLFDGGARGLWEREG-------------------EVWAFFPAPVDL---------------PYEGVWEEVGDEDWLEAWRRDLKPALAPPFVVL-APWHTW-EGAEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGGFRPLEEAAEGEWVLLAYGR-
2	SPARKS	1ufka	0.308	0.843	3.651	threading_2	--MWVYRLKGTLEALDPILPGLFDGGARGLWEREG-------------------EVWAFFPAPVD---------------LPYEGVWEEVGDEDWLEAWRRDLKPALAPPFVVL-APWHTW-EGAEIPLVIEPG------HHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGGFRPLEEAAEGEWVLLAYGR-
3	PROSPECT2	1ufkA	0.308	0.843	3.378	threading_3	M--WVYRLKGTLEALDPILPGLFDGGARGLWEREG-------------------EVWAFFPAPVD---------------LPYEGVWEEVGDEDWLEAWRRDLKPALAPPFVVLAPWHT--WEGAEIPLV------IEPGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAAGFRPLEEAAEGEWVLLAYGR-
4	PPA-I	2nxeA	0.320	0.863	3.107	threading_4	--MWVYRLKGTLEALDPILPGLFDGGARGLWEREG-------------------EVWAFFPAPVD---------------LPYEGVWEEVGDEDWLEAWRRDLKPALAPP-FVVLAPWHTWE-GAEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGGFRPLEEAAEGEWVLLAYGR-
5	HHPRED-l	2nxc_A	0.313	0.840	2.787	threading_5	-MW-VYRLKGTLEALDPILPGLFDGGARGLWEREG-------------------EVWAFFPAPVDLP---------------YEGVWEEVGDEDWLEAWRRDLKPALAPP-FVVLAPWHT-WEGAEIPLVIEPG-----GHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLELPFGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAAGFRPLEEAAEGEWVLLAYGR-
6	HHPRED-g	2nxc_A	0.318	0.836	3.328	threading_6	-MW-VYRLKGTLEALDPILPGLFDGGARGLWERE-------------------GEVWAFFPAPVDLP---------------YEGVWEEVGDEDWLEAWRRDLKPALAPP-FVVLAPWHT-WEGAEIPLVIEPG-----GHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLLP-FGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAAGFRPLEEAAEGEWVLLAYGR-
7	SP3	1ufka	0.316	0.843	3.855	threading_7	MWVYRLKG--TLEALDPILPGLFDGGARGLWEREG-------------------EVWAFFPAPVDL---------------PYEGVWEEVGDEDWLEAWRRDLKPALAPPFVVL-APWHTW-EGAEIPLVIEP------GHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGGFRPLEEAAEGEWVLLAYGR-
8	SAM-T99	2nxeA	0.315	0.857	5.527	threading_8	M--WVYRLKGTLEALDPILPGLFDGGARGLWER-------------------EGEVWAFFPAPVDL---------------PYEGVWEEVGDEDWLEAWRRDLKPALAPP-FVVLAPWHT-WEGAEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGK-ALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAPFGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGILKDRAPLVREAMGAGFRPLEEAAEGEWVLLAYGR-
9	MUSTER	3grzB	0.344	0.645	2.024	threading_9	------------------------------------------------------------------------------------------------------YHVINLSRHLAIVPEWEDYVFKDQEIIRLDPGLAFGN--HQTTQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEILLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAESFQIDLKMRAGRWIGLAISRK
10	SPARKS	3grza	0.330	0.642	3.534	threading_10	----------------------------------------------------------------------------------------------------KYYHVINLSRHLAIVPEWEDYVFKDQEIIRLDPG-----GNHQTTQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEILLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAESFQIDLKMRAGRWIGLAISRK

Predicted Tertiary Structure


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TM-score=0.918 to 2nxeA SCOP code=c.66.1.39	TM-score=0.922 to 2nxeA SCOP code=c.66.1.39	TM-score=0.780 to 2nxeA SCOP code=c.66.1.39	TM-score=0.783 to 2nxeA SCOP code=c.66.1.39	TM-score=0.909 to 2nxeA SCOP code=c.66.1.39