Template-based Modeling Results for RF3_ECOLI

Submitted Primary Sequence

>Length 529
MTLSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGEMMKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGAVQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESVNVATARWVECADAKKFEEFKRKNESQLALDGGDNLAYIATSMVNLRLAQERYPDVQFHQTREH
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTLSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGEMMKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGAVQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESVNVATARWVECADAKKFEEFKRKNESQLALDGGDNLAYIATSMVNLRLAQERYPDVQFHQTREH
CCCCCHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHCCHHHHCCEEEECCCCCCCCCHHHHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCEEEEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCEEEEECCCCCCCHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEEEECCCCEEEECCCCCCEECCHHHHHHHCCCCEECEECCCCEEEEECCCCCEECCCCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEEEHHHHHHHHHHHCCCCEEECCCCEEEEEEEECCCHHHHHHHHHHCCCCEEEECCCCEEEEEECHHHCCCHHHHCCCCEEEECCCC
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTLSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGEMMKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGAVQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESVNVATARWVECADAKKFEEFKRKNESQLALDGGDNLAYIATSMVNLRLAQERYPDVQFHQTREH
5533322220222100000000101211000100100200120010202223320201012114323010000001010220000001011131011101000100100000000242123213300200322300000000111230210020021004204110000101000241020000014110000213423211222013213233012201330022033423003200330022101212000000010021100110020003100111224232221322334000000001022114120000000000020252220210232321201200111114222022001000000010120200010032320202302212010011021313211320220022015221000011233210000000000010000101321302011230200000002122242022014333121011123100000201020301223033010121444
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTLSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGEMMKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGAVQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESVNVATARWVECADAKKFEEFKRKNESQLALDGGDNLAYIATSMVNLRLAQERYPDVQFHQTREH
1	MUSTER	2o0fA	0.994	0.922	4.362	threading_1	LS--PYLQEVAKRRTFAIISHPDAGKTTITEKVLLFG-------------------------------QITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMA-----VEEAYPGDILGLHNHGTIQIGDTFTQGEMMKFTGIPNFAPELFRRIRLKDP---KQLLKGLVQLSEEGAVQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESVNVATARWVECADAKKFEEFKRKNESQLALDGGDNLAYIATSMVNLRLAQERYPDVQFHQTREH
2	SPARKS	3tr5a	0.652	0.957	8.450	threading_2	------VEKQTARRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRH----ATSDW-ELEKQRGISVTTSV-QFPYKDYLINLLDTPGHADFTEDTYRTLTAVDS-ALVIDAAKGVEPRTIK-LEVCRLRHTP-ITFINK-DRDTRPSIELLDEIESILRIHCAPVTWPIG-GKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGD-LASELRNEIELVKGASHPFEREGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQAND--GHRDRIAFLRIASGQYQKGK-AYHVRLKKEIQINNALTF-AGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQGERFKFTGIPNFASELFRLVRLKDPLKQKALLKGLTQLSEEGATQLFRPLDSNELILGAVGLLQFDVVAYRLENEYNVKCVYESVNVVTARWVICDDKAVLERFNQEQSRNLAYDGGGHLTYLAPSRVNLEI-TEKWPEIQFSETREH
3	PROSPECT2	3tr5A	0.658	0.957	6.904	threading_3	V------EKQTARRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRH----ATSDW-ELEKQRGISVTTSV-QFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSA-LVIDAAKGVEPRTIKL-EVCRLRHTPI-TFINK-DRDTRPSIELLDEIESILRIHCAPVTWPIG-GKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLG-DLASELRNEIELVKGASHPFEREGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQAN--DGHRDRIAFLRIASGQYQKGK-AYHVRLKKEIQINNALTF-AGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQGERFKFTGIPNFASELFRLVRLKDPLKQKALLKGLTQLSEEGATQLFRPLDSNELILGAVGLLQFDVVAYRLENEYNVKCVYESVNVVTARWVICDDKAVLERFNQEQSRNLAYDGGGHLTYLAPSRVNLEIT-EKWPEIQFSETREH
4	PPA-I	3tr5A	0.654	0.957	10.475	threading_4	------VEKQTARRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRH----ATSDW-ELEKQRGISVTTSVQ-FPYKDYLINLLDTPGHADFTEDTYRTLTAVD-SALVIDAAKGVEPRTIKL-EVCRLRHTP-ITFINK-DRDTRPSIELLDEIESILRIHCAPVTWPIG-GKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLG-DLASELRNEIELVKGASHPFEREGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQAND--GHRDRIAFLRIASGQYQKGK-AYHVRLKKEIQINNALTF-AGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQGERFKFTGIPNFASELFRLVRLKDPLKQKALLKGLTQLSEEGATQLFRPLDSNELILGAVGLLQFDVVAYRLENEYNVKCVYESVNVVTARWVICDDKAVLERFNQEQSRNLAYDGGGHLTYLAPSRVNLEIT-EKWPEIQFSETREH
5	HHPRED-l	2h5e_A	1.000	0.921	0.298	threading_5	--LSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQ-------------------------------ITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMA-----VEEAYPGDILGLHNHGTIQIGDTFTQGEMMKFTGIPNFAPELFRRIRLKDP---KQLLKGLVQLSEEGAVQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESVNVATARWVECADAKKFEEFKRKNESQLALDGGDNLAYIATSMVNLRLAQERYPDVQFHQTRE-
6	HHPRED-g	3tr5_A	0.671	0.953	5.903	threading_6	-----VEKQTA-RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSR----HATSDW-ELEKQRGISVTTSV-QFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSAL-VIDAAKGVEPRTIKL-EVCRLRHTPI-TFINK-DRDTRPSIELLDEIESILRIHCAPVTWPIG-GKYFKGIYHLIEDAIYLYQPGKHERVGEERIE-GINNPELDKKLGD-LASELRNEIELVKGASHPFEREGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQAN---GHRDRIAFLRIASGQYQKG-KAYHVRLKKEIQINNALTF-AGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQGERFKFTGIPNFASELFRLVRLKDPLKQKALLKGLTQLSEEGATQLFRPLDSNELILGAVGLLQFDVVAYRLENEYNVKCVYESVNVVTARWVICDDKAVLERFNQEQSRNLAYDGGGHLTYLAPSRVNLEIT-EKWPEIQFSETREH
7	SP3	3tr5a	0.652	0.957	8.593	threading_7	------VEKQTARRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSR----HATSDW-ELEKQRGISVTTSVQ-FPYKDYLINLLDTPGHADFTEDTYRTLTAVD-SALVIDAAKGVEPRTIK-LEVCRLRHTP-ITFINK-DRDTRPSIELLDEIESILRIHCAPVTWPIG-GKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGD-LASELRNEIELVKGASHPFEREGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQAND--GHRDRIAFLRIASGQYQKGK-AYHVRLKKEIQINNALTF-AGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQGERFKFTGIPNFASELFRLVRLKDPLKQKALLKGLTQLSEEGATQLFRPLDSNELILGAVGLLQFDVVAYRLENEYNVKCVYESVNVVTARWVICDDKAVLERFNQEQSRNLAYDGGGHLTYLAPSRVNLEI-TEKWPEIQFSETREH
8	SAM-T99	2o0fA	1.000	0.921	7.707	threading_8	---SPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQ-------------------------------ITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMA-----VEEAYPGDILGLHNHGTIQIGDTFTQGEMMKFTGIPNFAPELFRRIRLKDP---KQLLKGLVQLSEEGAVQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESVNVATARWVECADAKKFEEFKRKNESQLALDGGDNLAYIATSMVNLRLAQERYPDVQFHQTREH
9	MUSTER	3tr5A	0.658	0.957	4.352	threading_9	------VEKQTARRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRH----ATSDW-ELEKQRGISVTTSV-QFPYKDYLINLLDTPGHADFTEDTYRTLTAVD-SALVIDAAKGVEPRTIKL-EVCRLRHTPI-TFINK-DRDTRPSIELLDEIESILRIHCAPVTWPIG-GKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLG-DLASELRNEIELVKGASHPFEREGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQAND--GHRDRIAFLRIASGQYQKGK-AYHVRLKKEIQINNALTF-AGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQGERFKFTGIPNFASELFRLVRLKDPLKQKALLKGLTQLSEEGATQLFRPLDSNELILGAVGLLQFDVVAYRLENEYNVKCVYESVNVVTARWVICDDKAVLERFNQEQSRNLAYDGGGHLTYLAPSRVNLEIT-EKWPEIQFSETREH
10	SPARKS	2h5ea	0.998	0.922	8.383	threading_10	--LSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFG-------------------------------QITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMA-----VEEAYPGDILGLHNHGTIQIGDTFTQGEMMKFTGIPNFAPELFRRIRLKDP---KQLLKGLVQLSEEGAVQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESVNVATARWVECADAKKFEEFKRKNESQLALDGGDNLAYIATSMVNLRLAQERYPDVQFHQTREH

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.567 to 2dy1A TM-score=0.820 to native SCOP code=b.43.3.1	TM-score=0.608 to 2dy1A TM-score=0.730 to native SCOP code=b.43.3.1	TM-score=0.610 to 2dy1A TM-score=0.730 to native SCOP code=b.43.3.1	TM-score=0.613 to 2dy1A TM-score=0.732 to native SCOP code=b.43.3.1	TM-score=0.611 to 2dy1A TM-score=0.731 to native SCOP code=b.43.3.1

Experimental Structure

Download 3zvoY

SCOP code=b.43.3.1