Template-based Modeling Results for PREA_ECOLI

Submitted Primary Sequence

>Length 411
MLTKDLSITFCGVKFPNPFCLSSSPVGNCYEMCAKAYDTGWGGVVFKTIGFFIANEVSPRFDHLVKEDTGFIGFKNMEQIAEHPLEENLAALRRLKEDYPDKVLIASIMGENEQQWEELARLVQEAGADMIECNFSCPQMTSHAMGSDVGQSPELVEKYCRAVKRGSTLPMLAKMTPNIGDMCEVALAAKRGGADGIAAINTVKSITNIDLNQKIGMPIVNGKSSISGYSGKAVKPIALRFIQQMRTHPELRDFPISGIGGIETWEDAAEFLLLGAATLQVTTGIMQYGYRIVEDMASGLSHYLADQGFDSLQEMVGLANNNIVPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDGGHQAMEWSEKTRTPHCNTEKCVGCLLCGHVCPVGCIELGEVKFKKGEKEHPVTL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLTKDLSITFCGVKFPNPFCLSSSPVGNCYEMCAKAYDTGWGGVVFKTIGFFIANEVSPRFDHLVKEDTGFIGFKNMEQIAEHPLEENLAALRRLKEDYPDKVLIASIMGENEQQWEELARLVQEAGADMIECNFSCPQMTSHAMGSDVGQSPELVEKYCRAVKRGSTLPMLAKMTPNIGDMCEVALAAKRGGADGIAAINTVKSITNIDLNQKIGMPIVNGKSSISGYSGKAVKPIALRFIQQMRTHPELRDFPISGIGGIETWEDAAEFLLLGAATLQVTTGIMQYGYRIVEDMASGLSHYLADQGFDSLQEMVGLANNNIVPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDGGHQAMEWSEKTRTPHCNTEKCVGCLLCGHVCPVGCIELGEVKFKKGEKEHPVTL
CCCCCCCEEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCCEEEEEEEHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCHHHCCCCCEEECCCCHHHCCCCCCEEECCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLTKDLSITFCGVKFPNPFCLSSSPVGNCYEMCAKAYDTGWGGVVFKTIGFFIANEVSPRFDHLVKEDTGFIGFKNMEQIAEHPLEENLAALRRLKEDYPDKVLIASIMGENEQQWEELARLVQEAGADMIECNFSCPQMTSHAMGSDVGQSPELVEKYCRAVKRGSTLPMLAKMTPNIGDMCEVALAAKRGGADGIAAINTVKSITNIDLNQKIGMPIVNGKSSISGYSGKAVKPIALRFIQQMRTHPELRDFPISGIGGIETWEDAAEFLLLGAATLQVTTGIMQYGYRIVEDMASGLSHYLADQGFDSLQEMVGLANNNIVPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDGGHQAMEWSEKTRTPHCNTEKCVGCLLCGHVCPVGCIELGEVKFKKGEKEHPVTL
553331112001020310000000012212200110120010000011012222422211001013210000002113120120022102002301331233000000003123102200310230101000000001203221202112212300230020034113100002012201200200200340201000000002112313123321211131322120001300120002001201320323301000000021020001001010200000000122014003200200130033221310220101123222213312321211230213310100201000221011002114422002023330100100011011100210323144234323234
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLTKDLSITFCGVKFPNPFCLSSSPVGNCYEMCAKAYDTGWGGVVFKTIGFFIANEVSPRFDHLVKEDTGFIGFKNMEQIAEHPLEENLAALRRLKEDYPDKVLIASIMGENEQQWEELARLVQEAGADMIECNFSCPQMTSHAMGSDVGQSPELVEKYCRAVKRGSTLPMLAKMTPNIGDMCEVALAAKRGGADGIAAINTVKSITNIDLNQKIGMPIVNGKSSISGYSGKAVKPIALRFIQQMRTHPELRDFPISGIGGIETWEDAAEFLLLGAATLQVTTGIMQYGYRIVEDMASGLSHYLADQGFDSLQEMVGLANNNIVPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDGGHQAMEWSEKTRTPHCNTEKCVGCLLCGHVCPVGCIELGEVKFKKGEKEHPVTL
1	MUSTER	1jqxA	0.232	0.745	2.369	threading_1	M----LNTTFANAKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEKRGNPLPAYVDLELGSINSMGLPNLGF--DYYLDYVLKNQKE----AQEGPIFFSIAGMSAAENIAMLKKIQESDSGITELNLSCPNVPGKPQ---LAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDHFDIMAEILNQFPLTYVNSVNSIGNGLFI--DPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLK-PEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMNQKGYQSIADFHGK-LKSL----------------------------------------------------------------------------------------
2	SPARKS	1gtea	0.348	0.966	5.254	threading_2	VDLVDISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDIVTNVSPRIVRGTTSGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCYNKNDWMELSRKAEASGADALELNLSCPHGMGLA----CGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVAGKRTTYGGVSGTAIRPIALRAVTTIARAL--PGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKSIEELQGWDGQSPGTESHFGELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHL-PTVTDTCTGCTLCLSVCPIDCIRMVSRTPKRGL-------
3	PROSPECT2	2b4gA	0.225	0.747	3.345	threading_3	----SLKVNILGHEFSNPFMNAAGVLCTTEEDLRRMTESESGSLIGKSCTLAPTGNPEPRYFGLPLGSINSMGLPNLG------VDFYLSYAAQ-THDYSRKPLFLSMSGLSVEESVEMVKKLVPEKGTILELNLSCPNVPGKP---QVGYDFDTTRTYLQKVSEAYGLPFGVKMPPYFDIAHFDMAAAVLNDFPLVKFITCVNSIGGLVIDPANETVVIKPKQGFGGLGGKYVLPTALANVNAFFRR--CPDKLVFGCGGVYSGEEAFLHILAGASMVQVGTALHDEGPIIFARLNKELQEIMTNKGYKTLDEFRGRVKTMD----------------------------------------------------------------------------------------
4	HHPRED-l	1gte_A	0.357	0.961	5.551	threading_4	VDLVDISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDIVTNVSPRIVRGTTSGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMSYNKNDWMELSRKAEASGADALELNLSCPHGG-----LACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTP-WPAVGARTTYGGVSGTAIRPIALRAVTTIARAL--PGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKSIEELQGWIGKALQYLGTFGELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTV-TDTCTGCTLCLSVCPIDCIRMVSRTPKRGL-------
5	PPA-I	1jqxA	0.225	0.747	4.101	threading_5	----MLNTTFANAKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEKEGNPLPAYVDLELGSINSMGLPNLG--FDYYLDYVLKNQKEN---AQEGPIFFSIAGMSAAENIAMLKKIQESDSGITELNLSCPNVPGKPQ---LAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDHFDIMAEILNQFPLTYVNSVNSIG--NGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLK-PEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMNQKGYQSIADFHGKLKSL-----------------------------------------------------------------------------------------
6	HHPRED-g	1gte_A	0.359	0.961	6.853	threading_6	VDLVDISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKVTNVSPRIVRGTTSGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCYNKNDWMELSRKAEASGADALELNLSCPHMG-----LACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADG-TPWPAVGARTTYGGVSGTAIRPIALRAVTTIARA--LPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKSIEELQGWIGKALQYLGTFGELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTV-TDTCTGCTLCLSVCPIDCIRMVSRTPKRGL-------
7	SP3	1gtea	0.350	0.966	5.433	threading_7	VDLVDISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDIVTNVSPRIVRGTTSGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCYNKNDWMELSRKAEASGADALELNLSCPHGMGLA----CGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVAGKRTTYGGVSGTAIRPIALRAVTTIARA--LPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKSIEELQGWDGQSPGTESHQKGKPVPRIVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHL-PTVTDTCTGCTLCLSVCPIDCIRMVSRTPKRGL-------
8	SAM-T99	1h7wD	0.337	0.990	6.789	threading_8	VDLVDISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDTNVSPRIVRGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCYNKNDWMELSRKAEASGADALELNLSCPHGMERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIAR--ALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLPKKPIPAIKDVIGKALQYLGTFGELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVT-DTCTGCTLCLSVCPIDCIRMVSRTTPYEPKRGLPL-
9	MUSTER	1ep3A	0.254	0.747	2.366	threading_9	MENNRLSVKLPGLDLKNPIIPASGCFGFGEEYAKYYDLNKLGSIMVKATTLHPFGNPTPRVAETASGMLNAIGLQNPG------LEVIMTEKLPWLNEFPELPIIANVAGSEEADYVAVCAKIGDANVKAIELNISCPNVKHGG--QAFGTDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINTLMGV---RFDLKTRQPILAN--ITGGLSGPAIKPVALKLIHQVAQDV---DIPIIGMGGVANAQDVLEMYMAGASAVAVGTAN-FADPFVCPKIIDKLPELMDQYRIESLESLIQEVKEGKK---------------------------------------------------------------------------------------
10	SPARKS	2dora	0.228	0.747	4.604	threading_10	----MLNTTFANAKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEKEGNPLPRYVDLELGSINSMGLPNLG--FDYYLDYVLKNQKE---NAQEGPIFFSIAGMSAAENIAMLKKIQESDSGITELNLSCPNVPGKPQ---LAYDFEATEKLLKEVFTFFTKPLGVKLPPDLVHFDIMAEILNQFPLTYVNSVNSIGN--GLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLK-PEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMNQKGYQSIADFHGKLKSL-----------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.858 to 1jqxA SCOP code=c.1.4.1	TM-score=0.861 to 1jqxA SCOP code=c.1.4.1	TM-score=0.793 to 1h7wD SCOP code=a.1.2.2	TM-score=0.859 to 2b4gB SCOP code=c.1.4.1	TM-score=0.817 to 1h7wD SCOP code=a.1.2.2