Template-based Modeling Results for PPID_ECOLI

Submitted Primary Sequence

>Length 623
MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNYAAKVNDQEISRGQFENAFNSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQAIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDTESLAGAEQAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDLKAGKGAEAMQAAGLKFGEPKTLSRSGRDPISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNYAAKVNDQEISRGQFENAFNSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQAIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDTESLAGAEQAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDLKAGKGAEAMQAAGLKFGEPKTLSRSGRDPISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ
CHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNYAAKVNDQEISRGQFENAFNSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQAIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDTESLAGAEQAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDLKAGKGAEAMQAAGLKFGEPKTLSRSGRDPISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ
21110132131100100000000000100021112122321002024230122101300221133014212332232222321132012200320012100121044141212332023002212112332322221010004422221320021012210022012002222221321022111111222112212121310123222233211211221221111121120011312221123211211021102211331233332311111132331022012113432302100322123221232212011033221132012002223232111020211000010111232424213301310132232320220022002200210233232121014212120121021233312332313300200110010122123222131110222100001011123422321220132023202222122103210330021033232131023121201223212322432102000203122433211000223311000000231342322331131003001321122002100210243041210321245
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNYAAKVNDQEISRGQFENAFNSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQAIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDTESLAGAEQAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDLKAGKGAEAMQAAGLKFGEPKTLSRSGRDPISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ
1	PROSPECT2	1m5ya	0.204	0.621	2.612	threading_1	V-------------------------------------DKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPD--------DATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIAN---IAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVTELNLSHILIP-------------------------------------------LPENPTSDQVNEA-----------------------ESQARAIVDQARNGADFGKLAIAHSADQ-QALNGGQMGWGRIQELPGIFAQALSAKKGDIVGPIRSGVGFHILKVNDLRGESKNI------------------------------------------------------------------------------------------------SVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGK---TTFAAAAKEFSQDPGS---ANQGGDLGW---ATPDIFDPAFRDALT----RLNKGQMSAPVHSSFGWHLIELLDTRNVD-------RAYRMLMNRKFSEEAASWMQEQRASAYVKI-----LS
2	PPA-I	1m5yD	0.191	0.555	1.677	threading_2	-------------------------------------VDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPD--------DATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQN---NMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRITILPQEVESLAQQTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNDFGKLAIAHGIFAQALSTAKKGGVGFHILKVNDLRGESKNISVTEVHARHILLKPVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRNKGQMSAPVHSSFGWHLIELLDTRNVDKRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3	SAM-T99	1m5yD	0.241	0.586	2.892	threading_3	--------------------------------------DKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDD---AT-----LRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNN----TLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRN-------------------------------------------------------------------------NEVRITILPQEV--------ESLAQQTELNLSHILIEAESQARAIVDQARNGADFGKLAIAHSADQ-QALNGGQMGWGRIQELPGIFAQASTAKKGDIVGPIRSGVGFHILKVNDLRGES----------------------------KNISVTEV--------------------------------------------------HARHILLKPSPIMTD-----------------------------------EQARVKLEQIAADIKSGKTTAAAKEFSQDPGSANQGGDLGTPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTR------NVDKRAYRMLMNRKFSEEAASWMQEQRASAYVKI-------
4	HHPRED-l	1m5y_A	0.211	0.539	5.188	threading_4	-------------------------------------VDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQL-----PD---DATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQN---NMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRITILPQEVESLAQQV----ELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGA----DFGKLAIAHSIQELPGIFAQALDLRGESKNISVTEVHARHILLKPRVKLEQIAADISGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTLNKGQMSAPVHSSFGWHLIELLDTRNVD---------RAYRMLMNRKFSEEAASWMQEQRASAYVKILS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5	HHPRED-g	1m5y_A	0.214	0.488	4.423	threading_5	-------------------------------------VDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQ----L-PDD---ATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQN---NMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVR---------------------------------RRITILPQEVESLAQQV-------TELNLSHILIPLPENPNGADFGKLAIAHSADESKNISVTEVHARHILLKARVKLEQIAADIKSKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDATRLNKGQMSAPVHSSFGWHLIELLDTRNV-D--------RAYRMLMNRKFSEEAASWMQEQRASAYVKILS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6	PROSPECT2	1qgra	0.096	0.973	2.011	threading_6	MQKFLERAAVENLPTFLVELSARVAAGLQIKNSLTSKDPDI----------KAQYQQRWREVKNYVLHTLGTETYRPSSASQCVAGIACAEIPVESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAILQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCPHVLPFIKEHIKNPDWRYRDAAVGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVRICELLPEAAINDVYLAPLLQCLIEPRVASNVCWAFSSLAEAAYEAADVADDQVQKLLETTDRPDGHQNNLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNE-------NVHRSVLQQASQAQVDKSDYDMVDYLNELRESCLEQPRVEFILSFIDHIAGDEDHTDGVQA
7	SP3	3nrka	0.173	0.493	4.257	threading_7	-------------------------------------LNRVIATVGTVSISELDLDDATEKYNRL--QKHLKHEDYRKS-------FRTRIIDFLIDRAIVDVVAEEESIQVNEQRVDSEIEKR--MEVMGITNRKQFEKTMETSGMPFELWVTELPYQIKKGQLLQLKIAV----------------------------------PPPNEQEIRSWYNQNKDKVGFEIRYRIISI----------------------------APENDSIQEENRLYKEVSEIRKSILADPSSFALIAGSPRNDPALRARRGMVEWISSFDLYKYSKITATIPNGGVSEVFRDERKRYCILKIEGK--RPTPMENLRGGIQNILYRDKEEDTFHRWLKESRAEIPIQIFD-EAYRKENKIPLKEETFHL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8	PROSPECT2	1qsaa	0.096	0.803	1.950	threading_8	IKQAWDNRQMDVVEQMMPGLYLEYRQITD----------------DLMNQPAVTVTNFVRA----------------NPTLPPARTLQSRFVNELARREDWRGLLAFSPEKPGTTEAQCNYYYAKELWLTGKSQDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV----LTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQA--QQLNEDQIQELRDIVAWRLMGND---------VTDEQAKWRDDAIMRSQSTSLIERR-------------VRMALGTGDRRGLNTWLAR--------------------------LPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEE----YELKIDKAPQNVDSALTQGPEMARVRELMY-----------------------------WNLDNTARSEWANLVEQAQLARYAFNLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPKV----KSPVGASGLMQIMPSIPGYSSPGQLLDPETNINIGTSYLQYPGRVRTWLGNSAGRIDAVAFRY
9	SAM-T99	3rfwA	0.246	0.379	3.824	threading_9	----------------------------------------TVATVNGKSISDTEVSEFFAPMLR------GQDFKTLPDN------QKKALIQQYIMQDLILQDAKKQNLE-----------KDPLYTK-----------------------LDRAKDAILVNVYQE--------------------------------------------------------------------------KINIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGGKKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAFALKNGTITTPVKTNFGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDLLNSAK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10	MUSTER	1m5yD	0.195	0.618	1.478	threading_10	-------------------------------------VDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPD--------DATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAK---QNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRI---------------------------------TILPQEVESLAQQTE------LNLSHILIPLPEN----------------------PTSDQ--VNEA----ESQARAIVDQARNGADFGKLAIAHSADQ-QALNGGQMGWGRIQELPGIFAQALSAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSMTDEQARVKLEQIAADIKSGKTTFAAAAKEFS----QDPGSANQGGDLGWATPDIFDPAFRDALTR---NKGQMSAPVHS-SFGWHLIELLDTRNVDK----RAYRMLMNRKFSEEAASWMQEQRASAYVKILSN--------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.516 to 1m5yD SCOP code=a.223.1.2	TM-score=0.610 to 1m5yD SCOP code=a.223.1.2	TM-score=0.495 to 1m5yD SCOP code=a.223.1.2	TM-score=0.623 to 1m5yD SCOP code=a.223.1.2	TM-score=0.549 to 1m5yD SCOP code=a.223.1.2