Template-based Modeling Results for PPIA_ECOLI

Submitted Primary Sequence

>Length 190
MFKSTLAAMAAVFALSALSPAAMAAKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MFKSTLAAMAAVFALSALSPAAMAAKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MFKSTLAAMAAVFALSALSPAAMAAKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP
4210010000000000011222222332110101012020201012430120020002004211131000000020000200102331333322220331033204112000000221122111000000002011022132211000001002012002201203233212233112321101102014
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MFKSTLAAMAAVFALSALSPAAMAAKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP
1	MUSTER	1clhA	1.000	0.874	4.580	threading_1	------------------------AKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP
2	SPARKS	1zkca	0.321	0.853	5.211	threading_2	-------------------SSGLVPRGSGYVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGEWGKPFKDEFRPNLSHTRGILSMANS-GPNSNRSQFFITFRSCAYLDK-----KHTIFGRVVGGFDVLTAMENVESDPK---TDRPKEEIRIDATTVFV
3	PROSPECT2	3s6mA	0.569	0.842	4.212	threading_3	--------------------------PGSMVELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGLKQKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSQGWGYAVFGKVVEGQDIVDKIKAVKTGS---HQDVPNDDVVIEKAVVV-
4	PPA-I	1clhA	1.000	0.874	6.127	threading_4	------------------------AKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP
5	HHPRED-l	1v9t_A	0.994	0.868	3.044	threading_5	------------------------AKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVL-
6	HHPRED-g	1v9t_A	0.994	0.874	2.763	threading_6	------------------------AKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVLP
7	SP3	1zkca	0.327	0.853	4.689	threading_7	-------------------SSGLVPRGSGYVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGEWGKPFKDEFRPNLSHTRGILSMANS-GPNSNRSQFFITFRSCAYLDK-----KHTIFGRVVGGFDVLTAMENVESDP---KTDRPKEEIRIDATTVFP
8	SAM-T99	1clhA	1.000	0.874	4.314	threading_8	------------------------AKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP
9	MUSTER	3s6mA	0.575	0.842	4.448	threading_9	--------------------------PGSMVELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGLKQKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHTPQGWGYAVFGKVVEGQDIVDKIKAVKT---GSHQDVPNDDVVIEKAVVV-
10	SPARKS	2k7na	0.337	0.858	5.103	threading_10	-----------------MAAIPPDSWQPPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGAYGKQFEDELHPDLKFTAGILAMANA-GPDTNGSQFFVTLAPTQWLDGK-----HTIFGRVCQGIGMVNRVGMVETNS----QDRPVDDVKIIKAYPSG

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.934 to 1clhA TM-score=0.874 to native SCOP code=b.62.1.1	TM-score=0.934 to 1clhA TM-score=0.874 to native SCOP code=b.62.1.1	TM-score=0.863 to 2fu0A TM-score=0.887 to native SCOP code=b.62.1.1	TM-score=0.884 to 1lopA TM-score=0.954 to native SCOP code=b.62.1.1	TM-score=0.934 to 1clhA TM-score=0.874 to native SCOP code=b.62.1.1

Experimental Structure

Download 1j2aA

SCOP code=b.62.1.1