Template-based Modeling Results for PINE_ECOLI

Submitted Primary Sequence

>Length 184
MLIGYVRVSTNDQNTDLQRNALNCAGCELIFEDKISGTKSERPGLKKLLRTLSAGDTLVVWKLDRLGRSMRHLVVLVEELRERGINFRSLTDSIDTSTPMGRFFFHVMGALAEMERELIVERTKAGLETARAQGRIGGRRPKLTPEQWAQAGRLIAAGTPRQKVAIIYDVGVSTLYKRFPAGDK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLIGYVRVSTNDQNTDLQRNALNCAGCELIFEDKISGTKSERPGLKKLLRTLSAGDTLVVWKLDRLGRSMRHLVVLVEELRERGINFRSLTDSIDTSTPMGRFFFHVMGALAEMERELIVERTKAGLETARAQGRIGGRRPKLTPEQWAQAGRLIAAGTPRQKVAIIYDVGVSTLYKRFPAGDK
CEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLIGYVRVSTNDQNTDLQRNALNCAGCELIFEDKISGTKSERPGLKKLLRTLSAGDTLVVWKLDRLGRSMRHLVVLVEELRERGINFRSLTDSIDTSTPMGRFFFHVMGALAEMERELIVERTKAGLETARAQGRIGGRRPKLTPEQWAQAGRLIAAGTPRQKVAIIYDVGVSTLYKRFPAGDK
2010001114432223101210330201000212122343322002200320231110000101211210310020022024220101002211212120020001000000211231012113210200242332212434123310220031132312132003203010100131133235
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLIGYVRVSTNDQNTDLQRNALNCAGCELIFEDKISGTKSERPGLKKLLRTLSAGDTLVVWKLDRLGRSMRHLVVLVEELRERGINFRSLTDSIDTSTPMGRFFFHVMGALAEMERELIVERTKAGLETARAQGRIGGRRPKLTPEQWAQAGRLIAAGTPRQKVAIIYDVGVSTLYKRFPAGDK
1	MUSTER	1gdtA	0.361	0.978	3.813	threading_1	MLFGYARVSTSQQSLDIQVRALKDAGVKRIFTDKASGSSSDRKGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDGISTDGEMGKMVVTILSAVAQAERQRILERTNEGRQEAMAKGVVFGRKRKID---RDAVLNMWQQGLGASHISKTMNIARSTVYKVINESN-
2	SPARKS	1gdta	0.361	0.978	3.844	threading_2	MLFGYARVSTSQQSLDIQVRALKDAGVNRIFTDKASGSSSDRKGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDGISTDGEMGKMVVTILSAVAQAERQRILERTNEGRQEAMAKGVVFGRKRKID---RDAVLNMWQQGLGASHISKTMNIARSTVYKVINESN-
3	PROSPECT2	2r0qC	0.266	0.962	3.399	threading_3	MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEK------NRPILQKALNFVRMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEKFMKDLIIQILAMVSEQERNESKRRQAQGIQVAKEKGVYKGRPLLYSRVIYHRVVEMLEEGQAISKIAKEVNITRQTVYRIKHD-NG
4	PPA-I	1gdtA	0.356	0.978	5.845	threading_4	RLFGYARVSTSQQSLDIQVRALKDAGVNRIFTDKASGSSSDRKGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDGISTDGEMGKMVVTILSAVAQAERQRILERTNEGRQEAMAKGVVFGRKRKID---RDAVLNMWQQGLGASHISKTMNIARSTVYKVINESN-
5	HHPRED-l	1gdt_A	0.356	0.978	4.599	threading_5	MRFGYARVSTSQQSLDIQVRALKDAGVNRIFTDKASGSSSDRKGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDGISTDGEMGKMVVTILSAVAQAERQRILERTNEGRQEAMAKGVVFGRKRKIDRD---AVLNMWQQGLGASHISKTMNIARSTVYKVINESN-
6	HHPRED-g	1gdt_A	0.356	0.978	3.889	threading_6	MRFGYARVSTSQQSLDIQVRALKDAGVKRIFTDKASGSSSDRKGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDGISTDGEMGKMVVTILSAVAQAERQRILERTNEGRQEAMAKGVVFGRKRKIDRDA---VLNMWQQGLGASHISKTMNIARSTVYKVINESN-
7	SP3	1gdta	0.361	0.978	4.065	threading_7	MLFGYARVSTSQQSLDIQVRALKDAGVNRIFTDKASGSSSDRKGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDGISTDGEMGKMVVTILSAVAQAERQRILERTNEGRQEAMAKGVVFGRKRKID---RDAVLNMWQQGLGASHISKTMNIARSTVYKVINESN-
8	SAM-T99	3ploX	0.836	0.663	5.302	threading_8	-LIGYVRVATNDQNTDLQRNALVCAGCEQIFEDKLSGTRTDRPGLKRALKRLQKGDTLVVWKLDRLGRSMKHLISLVGELRERGINFRSLTDSIDTSSPMGRFFFHVMGALAEVERELIIERT-------------------------------------------------------------
9	MUSTER	2r0qC	0.266	0.962	3.294	threading_9	MIIGYARVSSLDQNLERQLENLKTFGAEKIFTEK------NRPILQKALNFVRMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVFMKDLIIQILAMVSEQERNESKRRQAQGIQVAKEKGVYKGRPLLYSRVIYHRVVEMLEEGQAISKIAKEVNITRQTVYRIKHDNG-
10	SPARKS	2r0qc	0.260	0.962	3.524	threading_10	MIIGYARVSSLDQNLERQLENLKTFGAEKIFT------EKNRPILQKALNFVRMGDRFIVESIDRLGRNYNEVIHTVNYLKDKEVQLMITSLPMMNEVFMKDLIIQILAMVSEQERNESKRRQAQGIQVAKEKGVYKGRPLLYSRVIYHRVVEMLEEGQAISKIAKEVNITRQTVYRIKHDNG-

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.775 to 1gdtA SCOP code=a.4.1.2	TM-score=0.860 to 1gdtA SCOP code=a.4.1.2	TM-score=0.777 to 1gdtA SCOP code=a.4.1.2	TM-score=0.644 to 1gdtA SCOP code=a.4.1.2	TM-score=0.860 to 1gdtA SCOP code=a.4.1.2