Template-based Modeling Results for PGPA_ECOLI

Submitted Primary Sequence

>Length 172
MTILPRHKDVAKSRLKMSNPWHLLAVGFGSGLSPIVPGTMGSLAAIPFWYLMTFLPWQLYSLVVMLGICIGVYLCHQTAKDMGVHDHGSIVWDEFIGMWITLMALPTNDWQWVAAGFVIFRILDMWKPWPIRWFDRNVHGGMGIMIDDIVAGVISAGILYFIGHHWPLGILS
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTILPRHKDVAKSRLKMSNPWHLLAVGFGSGLSPIVPGTMGSLAAIPFWYLMTFLPWQLYSLVVMLGICIGVYLCHQTAKDMGVHDHGSIVWDEFIGMWITLMALPTNDWQWVAAGFVIFRILDMWKPWPIRWFDRNVHGGMGIMIDDIVAGVISAGILYFIGHHWPLGILS
CCCCCCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTILPRHKDVAKSRLKMSNPWHLLAVGFGSGLSPIVPGTMGSLAAIPFWYLMTFLPWQLYSLVVMLGICIGVYLCHQTAKDMGVHDHGSIVWDEFIGMWITLMALPTNDWQWVAAGFVIFRILDMWKPWPIRWFDRNVHGGMGIMIDDIVAGVISAGILYFIGHHWPLGILS
5532344432131201010000000000000002201010000000000000110111000000000000001002101331223120100001000000000000010010000000000001002000020012203100000000000000000000000100111114
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTILPRHKDVAKSRLKMSNPWHLLAVGFGSGLSPIVPGTMGSLAAIPFWYLMTFLPWQLYSLVVMLGICIGVYLCHQTAKDMGVHDHGSIVWDEFIGMWITLMALPTNDWQWVAAGFVIFRILDMWKPWPIRWFDRNVHGGMGIMIDDIVAGVISAGILYFIGHHWPLGILS
1	MUSTER	1rfzA	0.170	0.820	1.146	threading_1	----SNASEFIN---NLEQTARRWLEERGV--------TVEKIAELVYYLQSKYHPRVISKREVQNAILTGIQLDKLAEDGRLDEDEGLYGVDEILALSIVNVY---------SIGFTNYGYIDKQKPGILQYLNDKSTGKCNTFLDDIVGAIAAAASSRLAHRA-------
2	SPARKS	1rfza	0.176	0.826	1.382	threading_2	------SNASEFINNLEQTARRWLEE---RGV------TVEKIAELVYYLQSKYHPVNRVIREVQNAILTGIQLDKLAEDGRLDEDEGLYGVDEILALSIVN--------VYGSIGFTNYGYIDKQKPGILQYLNDKSTGKCNTFLDDIVGAIAAAASSRLAHRA-------
3	PROSPECT2	1rfzA	0.140	0.872	1.669	threading_3	SNASEFINNLEQTARRWVEKIAELVYYLQSKYHPDLTEECIEN-------VNRVISKREVQNAILTGIQLDKLAEDEPLQSIIRRDEGLYGVDEILALSIVNVYGSI--------GFTNYGYIDKQKPGILQYLNDKSTGKCNTFLDDIVGAIAAAASSRLAHR-------A
4	PPA-I	1rfzA	0.169	0.826	1.936	threading_4	-------SNASEFINNLEQTARRWLEERGV--------TVEKIAELVYYLQSKYHPRVISKREVQNAILTGIQLDKLAEDGRLDEDEGLYGVDEILALSIVNVYGS--------IGFTNYGYIDKQKPGILQYLNDKSTGKCNTFLDDIVGAIAAAASSRLAHRA-------
5	HHPRED-l	1rfz_A	0.184	0.820	4.847	threading_5	--------SNA-SEFI-NNLEQTARRW-----LEERGVTVEKIAELVYYLQSKYLT-EECIVEVQNAILTGIQLDKLAEDGRLRRDEGLYGVDEILALSIVNVYG--------SIGFTNYGYIDKQKPGILQYLNDKSTGKCNTFLDDIVGAIAAAASSRLAHRA-------
6	HHPRED-g	1rfz_A	0.196	0.802	4.923	threading_6	--------SNA-SEFI-NNLEQTARRERGV--------TVEKIAELVYYLQSKYLT-EEENVEVQNAILTGIQLDKLAEDGRIRRDEGLYGVDEILALSIVNVY---GS-----IGFTNYGYIDKQKPGILQYLNDKSTGKCNTFLDDIVGAIAAAASSRLAHRA-------
7	SP3	1rfza	0.138	0.884	0.637	threading_7	ASEFINNLEQTARRWLEERVEKIAELVYYLQS-KYHPD----LTEECIENVNRVISKREVQNAILTGIQLDKLAEDGRLQSIIRRDEGLYGVDEILALSIVNV--------YGSIGFTNYGYIDKQKPGILQYLNDKSTGKCNTFLDDIVGAIAAAASSRLAHRA-------
8	SAM-T99	1tlqA	0.181	0.802	1.103	threading_8	RGVIEDIARIVQKLQEKYNPNLPLS------------------VCENVEKVLNKRIIHAVLTGLALDQLAEQKLLPEPLQHLVETDEPLYGIDEIIPLSIVNVYGSI--------GLTNFGYLDKEKIGIIKELDE-SPDGIHTFLDDIVAALAAAAASRIAHTH-------
9	MUSTER	1y9iA	0.133	0.831	0.925	threading_9	----KQSALESKARSWLIEIDDIAELVLFL-QQKYHPGLELDICRQNVEHVLRK-REVQNAVLTGIQLDVA--PLQNIISA----DEGLYGVDEILALSIVNVY----------IGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLAHSY-------
10	SPARKS	2f07a	0.073	0.953	1.170	threading_10	-PFTMPKQTSGKYEKILQAAIEVISEK---GLDKA---SISDIVKTAQGTFYLYFSSKN-ALIPAIAENLLTHTLDQIKGRLHGDEDFWTVLDILIDETFLITERHKDIIVLCYSGLASMEKWETIYQPYYSWLEKIINKAIHEVTEGINSKWTARTIINLVENTAERFYIG

Predicted Tertiary Structure


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TM-score=0.809 to 1rfzA SCOP code=a.195.1.1	TM-score=0.851 to 1rfzA SCOP code=a.195.1.1	TM-score=0.790 to 1rfzA SCOP code=a.195.1.1	TM-score=0.849 to 1rfzA SCOP code=a.195.1.1	TM-score=0.800 to 1rfzA SCOP code=a.195.1.1