Template-based Modeling Results for PGAC_ECOLI

Submitted Primary Sequence

>Length 441
MINRIVSFFILCLVLCIPLCVAYFHSGELMMRFVFFWPFFMSIMWIVGGVYFWVYRERHWPWGENAPAPQLKDNPSISIIIPCFNEEKNVEETIHAALAQRYENIEVIAVNDGSTDKTRAILDRMAAQIPHLRVIHLAQNQGKAIALKTGAAAAKSEYLVCIDGDALLDRDAAAYIVEPMLYNPRVGAVTGNPRIRTRSTLVGKIQVGEYSSIIGLIKRTQRIYGNVFTVSGVIAAFRRSALAEVGYWSDDMITEDIDISWKLQLNQWTIFYEPRALCWILMPETLKGLWKQRLRWAQGGAEVFLKNMTRLWRKENFRMWPLFFEYCLTTIWAFTCLVGFIIYAVQLAGVPLNIELTHIAATHTAGILLCTLCLLQFIVSLMIENRYEHNLTSSLFWIIWFPVIFWMLSLATTLVSFTRVMLMPKKQRARWVSPDRGILRG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MINRIVSFFILCLVLCIPLCVAYFHSGELMMRFVFFWPFFMSIMWIVGGVYFWVYRERHWPWGENAPAPQLKDNPSISIIIPCFNEEKNVEETIHAALAQRYENIEVIAVNDGSTDKTRAILDRMAAQIPHLRVIHLAQNQGKAIALKTGAAAAKSEYLVCIDGDALLDRDAAAYIVEPMLYNPRVGAVTGNPRIRTRSTLVGKIQVGEYSSIIGLIKRTQRIYGNVFTVSGVIAAFRRSALAEVGYWSDDMITEDIDISWKLQLNQWTIFYEPRALCWILMPETLKGLWKQRLRWAQGGAEVFLKNMTRLWRKENFRMWPLFFEYCLTTIWAFTCLVGFIIYAVQLAGVPLNIELTHIAATHTAGILLCTLCLLQFIVSLMIENRYEHNLTSSLFWIIWFPVIFWMLSLATTLVSFTRVMLMPKKQRARWVSPDRGILRG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MINRIVSFFILCLVLCIPLCVAYFHSGELMMRFVFFWPFFMSIMWIVGGVYFWVYRERHWPWGENAPAPQLKDNPSISIIIPCFNEEKNVEETIHAALAQRYENIEVIAVNDGSTDKTRAILDRMAAQIPHLRVIHLAQNQGKAIALKTGAAAAKSEYLVCIDGDALLDRDAAAYIVEPMLYNPRVGAVTGNPRIRTRSTLVGKIQVGEYSSIIGLIKRTQRIYGNVFTVSGVIAAFRRSALAEVGYWSDDMITEDIDISWKLQLNQWTIFYEPRALCWILMPETLKGLWKQRLRWAQGGAEVFLKNMTRLWRKENFRMWPLFFEYCLTTIWAFTCLVGFIIYAVQLAGVPLNIELTHIAATHTAGILLCTLCLLQFIVSLMIENRYEHNLTSSLFWIIWFPVIFWMLSLATTLVSFTRVMLMPKKQRARWVSPDRGILRG
542110000000000000000000000100010000000000000000000000011221222332223424310100000000112410220010003241320100000111223021002201330320100112323010100110010030100000101110221000200210231220000001020333221001000010000000122013211000000000000001002302301331001001000200223100000130100121232031003201110210010002002201343102000000100000000000000000000000000000000100001000000000000000000001221221100000000000000000000100000020111233320201123322398
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MINRIVSFFILCLVLCIPLCVAYFHSGELMMRFVFFWPFFMSIMWIVGGVYFWVYRERHWPWGENAPAPQLKDNPSISIIIPCFNEEKNVEETIHAALAQRYENIEVIAVNDGSTDKTRAILDRMAAQIPHLRVIHLAQNQGKAIALKTGAAAAKSEYLVCIDGDALLDRDAAAYIVEPMLYNPRVGAVTGNPRIRTRSTLVGKIQVGEYSSIIGLIKRTQRIYGNVFTVSGVIAAFRRSALAEVGYWSDDMITEDIDISWKLQLNQWTIFYEPRALCWILMPETLKGLWKQRLRWAQGGAEVFLKNMTRLWRKENFRMWPLFFEYCLTTIWAFTCLVGFIIYAVQLAGVPLNIELTHIAATHTAGILLCTLCLLQFIVSLMIENRYEHNLTSSLFWIIWFPVIFWMLSLATTLVSFTRVMLMPKKQRARWVSPDRGILRG
1	MUSTER	2z86C2	0.161	0.732	1.273	threading_1	IDAATKIMCSNAEVEKNEIISKYREITAKKSERAELKEVEPIPLDWPSDLVQLLQQKVPYFYRKKEKIESLKRVPLVSIYIPAYNCSKYIVRCVESALNQTITDLEVCICDDGSTDDTLRILQEHYANHPRVRFISQK-NKGIGSASNTAVRLCRGFYIGQLDSDDFLEPDAVELCLDEFRKDLSLACVYTTNRNIDREGNLIS------NGYNWPIYSREKLTSAM--ICHHFRMFTARAWNLTEGFNESINAVDYDMYLKLSEVG-PFKHINKICYNRVLGENTS-----IKKLDIQKENHFKVVNESLSRLGIKKYKYSPLTNLNECRKYTWEKI-------------------------------------------------------------------------------------------------------
2	SPARKS	1xhba	0.132	0.776	3.041	threading_2	--------------------------------------------------------NRSLPDVRLKTKVYPDNLPTTSVVIVFHNEWSTLLRTVHSVINRSPRHMEIVLVDDASERDFRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRR-TVVCPIIDVISDDTFEYMAGSDMTYGGFNVPQREMDRRKGTPTMAGGLFSIDRDYFQEIGTYDAGMDIENLEISFRIWQCGGTLEIVTCSHVGHVFGQINKNNRRLAEVWMDEFKNFFYIISPGVTKVDDISSRLGLRRKL-----QCKPFSWYLENIYPDSQIPRHYFSLGEIRNVETNQCLDN------------MARKENE-------------------------KVGIFNCHGMGGNQVFSYTANKIRTD
3	PROSPECT2	1xhbA1	0.143	0.651	2.563	threading_3	VRLEGCK-----------------------------------------------------------TKVYPDNLPTTSVVIVFHNEWSTLLRTVHSVINRSPRHEEIVLVDDASERDFLPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDGENLEISFRIWQCGGTLEIVTCSHVGHVFGQIINKNNRRLAEWMDEFKNFFYIISPGVTKVDYGDISSRL-----------------------------------------------------------------------------------------------GLRRKLQCKPFSWIYPDSQIPRH
4	PPA-I	2z86C1	0.174	0.522	2.254	threading_4	---------------------------------------------------------TLPPLPESTNDDDQLIIDGLSIVIPTYNRAKILAITLACLCNQKIYDYEVIVADDGSKENIEEIVREFESLLNIKYVRQKDYGYQLCAVRNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNVALIGPRKYIDTSKHTYLDFLSDWRIEHFKNTDNLRLCNTPFRFFSGGNVAFAKKWLFRAGWFDEEFTGEDNEFGYRLYREGCYFRSVEGAMAYHQEPPGKE----------------------------------------------------------------------------------------------------------------------------------------------------------
5	HHPRED-l	1xhb_A	0.152	0.805	4.167	threading_5	--------------------------------------------------------N--RSLPDVRLEVYPDNLPTTSVVIVFHNEASTLLRTVHSVINRSPRHMEIVLVDDASERDFLRPLESYVKKLKPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDD-TFEYMMTYGGFNWPQREMDRRRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDGENLEISFRIWQCGGTLEIVTCSHVGHVF----QIINKNNRRLAEVWMDEFKNFFYIISDYGDISSRLGLRLQCKPFSW----------YLEN--IYPDSQ-IPRHY-FSLGEI-------RNVETNQCLDNMACHGMGGNQVFSYTAKEIR-TDDLCLDVSKLGPVTMLHHKGNQLWEYPVKLTLQ-
6	HHPRED-g	1qg8_A	0.150	0.499	3.454	threading_6	--------------------------------------------------------------------------PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLN-DNRVRFYQSDEKTRYAALINQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTYHN---D--IVKETVRPAA------QVTWNAPCAIDHCSVMHRYSVLEKVSYWDESPRIGDARFFWRVNH-FYPFYPLDEELDLNIT----------EFVRNLPPQRNCRELRESLKKLGMG----------------------------------------------------------------------------------------------------------------------------
7	SP3	2d7ia	0.145	0.984	2.526	threading_7	KDWHDKEAIRRDAQRVGNG---EQGRPYPMTDAERVDQAYRENIYVSDKISLNRSLPDIRHPNCNSKRY-LETLPNTSIIIPFHNEWSSLLRTVHSVLNRSPPELEIVLVDDFSDEHLKKPLEDYMALFPSVRILRTKKREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLLDRIARNRK-TIVCPMIDVIDHDDFRYETQAGDAMRGAELQKADPSDPFESPVMAGGLFAVDRKWFWELGGYDPGLEIEQYEISFKVWMCGGRMEDIPCSRVGHIYRKYARNLKRVAEVWMDEYAEYIYQRRPEYRHLSDVAVQKKLRSSLKSFKWFMTKI--AWDLPKFYPPVEPPAAAWGEIRNVGTGLCAHGALGSPLRLEGCVRGRGEAAWNNMVFTFTWREDIRPGDPQHTKKFCFSPVTLYDMKGNQLWKYRKDKPVSG
8	SAM-T99	2z86C2	0.235	0.454	4.747	threading_8	---------------------------------------------------------YFYRKKEKIESATLKRVPLVSIYIPAYNCSKYIVRCVESALNQTITDLEVCICDDGSTDDTLRILQEHYANHPRVRFISQK-NKGIGSASNTAVRLCRGFYIGQLDSDDFLEPDAVELCLDEFRKDLSLACVYTTNRNIDRENLIS--------NGYNWPIYSREKLTSAM-ICHHFRMFTARAWNLTEGFNESSNAVDYDMYLKLSEVG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9	MUSTER	2z86C1	0.174	0.522	1.194	threading_9	------------------------------------------------STNDYVWAGKRKELDDQLII------DGLSIVIPTYNRAKILAITLACLCNQKIYDYEVIVADDGSKENIEEIVREFESLLNIKYVRQKDYGYQLCAVRNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNVALIGPRKYIDTSKHTYLDFLSDWRIEHFKNTDNLRLCNTPFRFFSGGNVAFAKKWLFRAGWFDEEFTGEDNEFGYRLYREGCYFRSVEGAMAYHQEPE-------------------------------------------------------------------------------------------------------------------------------------------------------------
10	SPARKS	3bcva	0.238	0.429	2.998	threading_10	------------------------------------------------------------------------LIPKVSVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIHKKNAG--LGACNSGLDVATGEYVAFCDSDDYVDSDYTYNVAQKYTCD----AVFTFKLYKNKNEIHTLLKDLIASDPYAREERAIQVSAK-------VVLYRRNLIEKKHLRFVSEPSEDLIFNVDVLANSNIVCVLP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.603 to 1h7qA SCOP code=c.68.1.1	TM-score=0.607 to 1h7qA SCOP code=c.68.1.1	TM-score=0.706 to 1xhbA SCOP code=b.42.2.1	TM-score=0.565 to 1h7qA SCOP code=c.68.1.1	TM-score=0.773 to 1xhbA SCOP code=b.42.2.1