Template-based Modeling Results for PGAB_ECOLI

Submitted Primary Sequence

>Length 672
MLRNGNKYLLMLVSIIMLTACISQSRTSFIPPQDRESLLAEQPWPHNGFVAISWHNVEDEAADQRFMSVRTSALREQFAWLRENGYQPVSIAQIREAHRGGKPLPEKAVVLTFDDGYQSFYTRVFPILQAFQWPAVWAPVGSWVDTPADKQVKFGDELVDREYFATWQQVREVARSRLVELASHTWNSHYGIQANATGSLLPVYVNRAYFTDHARYETAAEYRERIRLDAVKMTEYLRTKVEVNPHVFVWPYGEANGIAIEELKKLGYDMFFTLESGLANASQLDSIPRVLIANNPSLKEFAQQIITVQEKSPQRIMHIDLDYVYDENLQQMDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKEVWFPNRLLPMKADIFSRVAWQLRTRSGVNIYAWMPVLSWDLDPTLTRVKYLPTGEKKAQIHPEQYHRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDDALLSDYEDASAPAITAYQQAGFSGSLSEIRQNPEQFKQWARFKSRALTDFTLELSARVKAIRGPHIKTARNIFALPVIQPESEAWFAQNYADFLKSYDWTAIMAMPYLEGVAEKSADQWLIQLTNQIKNIPQAKDKSILELQAQNWQKNGQHQAISSQQLAHWMSLLQLNGVKNYGYYPDNFLHNQPEIDLIRPEFSTAWYPKND
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLRNGNKYLLMLVSIIMLTACISQSRTSFIPPQDRESLLAEQPWPHNGFVAISWHNVEDEAADQRFMSVRTSALREQFAWLRENGYQPVSIAQIREAHRGGKPLPEKAVVLTFDDGYQSFYTRVFPILQAFQWPAVWAPVGSWVDTPADKQVKFGDELVDREYFATWQQVREVARSRLVELASHTWNSHYGIQANATGSLLPVYVNRAYFTDHARYETAAEYRERIRLDAVKMTEYLRTKVEVNPHVFVWPYGEANGIAIEELKKLGYDMFFTLESGLANASQLDSIPRVLIANNPSLKEFAQQIITVQEKSPQRIMHIDLDYVYDENLQQMDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKEVWFPNRLLPMKADIFSRVAWQLRTRSGVNIYAWMPVLSWDLDPTLTRVKYLPTGEKKAQIHPEQYHRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDDALLSDYEDASAPAITAYQQAGFSGSLSEIRQNPEQFKQWARFKSRALTDFTLELSARVKAIRGPHIKTARNIFALPVIQPESEAWFAQNYADFLKSYDWTAIMAMPYLEGVAEKSADQWLIQLTNQIKNIPQAKDKSILELQAQNWQKNGQHQAISSQQLAHWMSLLQLNGVKNYGYYPDNFLHNQPEIDLIRPEFSTAWYPKND
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCEECHHHHHHHHHHHHHCCCEEECHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEHHHCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHCCCCEEECCCCHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCHHHCCCCHHCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCHHHCCCCCHHHHHHHHCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLRNGNKYLLMLVSIIMLTACISQSRTSFIPPQDRESLLAEQPWPHNGFVAISWHNVEDEAADQRFMSVRTSALREQFAWLRENGYQPVSIAQIREAHRGGKPLPEKAVVLTFDDGYQSFYTRVFPILQAFQWPAVWAPVGSWVDTPADKQVKFGDELVDREYFATWQQVREVARSRLVELASHTWNSHYGIQANATGSLLPVYVNRAYFTDHARYETAAEYRERIRLDAVKMTEYLRTKVEVNPHVFVWPYGEANGIAIEELKKLGYDMFFTLESGLANASQLDSIPRVLIANNPSLKEFAQQIITVQEKSPQRIMHIDLDYVYDENLQQMDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKEVWFPNRLLPMKADIFSRVAWQLRTRSGVNIYAWMPVLSWDLDPTLTRVKYLPTGEKKAQIHPEQYHRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDDALLSDYEDASAPAITAYQQAGFSGSLSEIRQNPEQFKQWARFKSRALTDFTLELSARVKAIRGPHIKTARNIFALPVIQPESEAWFAQNYADFLKSYDWTAIMAMPYLEGVAEKSADQWLIQLTNQIKNIPQAKDKSILELQAQNWQKNGQHQAISSQQLAHWMSLLQLNGVKNYGYYPDNFLHNQPEIDLIRPEFSTAWYPKND
433200100000000000000002332222223333222233323432000000000133223322110112102300210351212000011022023223322310000000102220012002002212120000000110222233213112321123210113102201423101000011200101112220000001112111233122310230133023102301310232032312000011130111002003411010000022111222212202000012312131002101213331111001010320113323323420310021034131100000001134130102000012310111020012001102231101000000001131332123132122233323232321220121133011000200210011010200001110001112201220010033122222122033113202200201020012002200210231312302001211121112230121002102100410000000000112202331032002200210342232332000101032133323332022320020002023110100000001112321203202310122213435
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLRNGNKYLLMLVSIIMLTACISQSRTSFIPPQDRESLLAEQPWPHNGFVAISWHNVEDEAADQRFMSVRTSALREQFAWLRENGYQPVSIAQIREAHRGGKPLPEKAVVLTFDDGYQSFYTRVFPILQAFQWPAVWAPVGSWVDTPADKQVKFGDELVDREYFATWQQVREVARSRLVELASHTWNSHYGIQANATGSLLPVYVNRAYFTDHARYETAAEYRERIRLDAVKMTEYLRTKVEVNPHVFVWPYGEANGIAIEELKKLGYDMFFTLESGLANASQLDSIPRVLIANNPSLKEFAQQIITVQEKSPQRIMHIDLDYVYDENLQQMDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKEVWFPNRLLPMKADIFSRVAWQLRTRSGVNIYAWMPVLSWDLDPTLTRVKYLPTGEKKAQIHPEQYHRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDDALLSDYEDASAPAITAYQQAGFSGSLSEIRQNPEQFKQWARFKSRALTDFTLELSARVKAIRGPHIKTARNIFALPVIQPESEAWFAQNYADFLKSYDWTAIMAMPYLEGVAEKSADQWLIQLTNQIKNIPQAKDKSILELQAQNWQKNGQHQAISSQQLAHWMSLLQLNGVKNYGYYPDNFLHNQPEIDLIRPEFSTAWYPKND
1	MUSTER	2epoA	0.127	0.796	0.744	threading_1	------------------------ATFLGLSSKQEKALVRLDKYLNLG-------AVSLVTDSATSIKVEGR----------QGYYQVSYLALLSAALRSGQDYEDLAYMADCSRNALSSAKKMIEVLALMGYSTFELYMEDTY------EIENQPYFGYFRGRYTVAELQEIED-DMIQTLAHLSA---FVKWGIKEVQELRDVEDILLIGE---EKVYDLIEGMFQTMAHLGRYLIKHGFQNRSLL---MCQHLERVLDIADKYGFNCQMWFFKLMSADGQYDR-------DVEIPEETRVYLDRLKER--VTLVYWD----YYQDSEEK---YNRNFQNHHKISQDIAFAGGAWKWIG--------FTPHNHFSRLVAIEANKACRKNQVKVIVTGW-------------------GDNGGETSQFSVLPALQIWLKKVSEHFLVSTGDFDDFMKIDLANLLPD-LPDNLSGINPNRYVLYQDVLCPLLEQHI--RPEKDKQHFASSAQQLGEISKRA----------EYAYIFETQAQLNALLALKISITSGIQKAYRNGDK------EHLSALAEKDFPQLYQMVEDFSDQ---------FSRQWQQENKIFGLDTI-DIRFGGLLKRIKR-----AQERLEQFISGQ--IDCV-EELEQEILPFND
2	SPARKS	2iw0a	0.167	0.329	1.580	threading_2	-------------------------------------------------------------------------------------------------VPVGTPIQPGLVALTYDDGPFTFTPQLLDILKQNDVRATFFVNGNNWANIEAGS--------------NPDTIRRMRADG-HLVGSHTYAHPDLNTLS---------------------------SADRISQMRQLEEATRRIDGFAPKYMRAPYLSCDAGCQGDLGGLGYHIIDTNLDTKDYENN----------KPETTHLSAEKFNNELSADVGANSYIVL--SHDVHEQTVVSLTQKLIDTLKSKGYRAVTVECLGDAPENWYKAH---HHHHH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3	PROSPECT2	1qgra	0.083	0.991	1.597	threading_3	MLERAAVENLPTFLVELSRVLANPGNTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHEAIGYICQDIDPEQLQDKSNEILTAPSNNVKLAATNALLNSLEFTKANFDKESERHFICPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT------KQDENDDDDDWNPCKATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMALEGPEPSQLKPLVIQAMPTLIELKDPSVVVRLPEAAINDVYLAPLLGLSAEPRVASNVCWSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSVQHQDALQISDVVMASLLRMFSGGVQEDALMAVSTLVEVLGGELKYMEAFKPFLGIGLKNYAEYQVCLAAVGDLCRALQSNIIPFCDEVMQLLLENLGPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYLKGDQENVHPDVMLVQPEFILSFIDHIAGDEDHTDGAFGKDVLEARPMIHELLTEGRRSKTNNQA
4	PPA-I	2iw0A	0.156	0.333	0.711	threading_4	---------------------------------------------------------------------------------------------VPVGTPILQCTQPGLVALTYDDGPFTFTPQLLDILKQNDVRATFFVNGNNWANIEAGS--------------NPDTIRRMRADGH-LVGSHTYAHPDLNTLS---------------------------SADRISQMRQLEEATRRIDGFAPKYMRAPYLSCDAGCQGDLGGLGYHIIDNLDTKDYENNKP-----------ETTHLSAEKFNNELSADVGANSYIVL--SHDVHEQTVVSLTQKLIDTLKSKGYRAVTVECLGDAPENWYKAHHHHHH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5	HHPRED-l	2w3z_A	0.151	0.335	3.641	threading_5	--------------------------------------------------------------------INPNALKIGSNHNNQAEGYAYSAETVRQMMNN-----QKLVFLTFDDGVDPNTPKILDVLAQQHVHATFFLVGCNITDK------------------VKPILQRQITEGH-ALGIHSFSHVYSLLYP------------------NRVGN----TQQIVSEVTRTQNALKDQLGFKTGVWRYPGGHLSWAADKQLAAQGIQWMD-----WNAVGDAEPLA----TRPTTVASMLAFLDGSAKNPNVVLMHDIS------EKTITLASLPQIIRYYKDRGYTFAVLK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6	HHPRED-g	2w3z_A	0.151	0.335	3.771	threading_6	--------------------------------------------------------------------INPNALKIGSNHNNQAEGYAYSAETVRQMMNN-----QKLVFLTFDDGVDPNTPKILDVLAQQHVHATFFLVGCNITD------------------KVKPILQRQITEG-HALGIHSFSHVYSLLY-P-----------------NRVGN----TQQIVSEVTRTQNALKDQLGFKTGVWRYPGGHLSWAADKQLAAQGIQWM-----DWNAVGDAEPLA----TRPTTVASMLAFLDGSAKNVQVVLMHDI----S--EKTITLASLPQIIRYYKDRGYTFAVLK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7	SP3	2iw0a	0.164	0.335	1.419	threading_7	----------------------------------------------------------------------------------------VPVGTPI-----LQCTQPGLVALTYDDGPFTFTPQLLDILKQNDVRATFFVNGNNWANIEAGS--------------NPDTIRRMRADG-HLVGSHTYAHPDLNTLS---------------------------SADRISQMRQLEEATRRIDGFAPKYMRAPYLSCDAGCQGDLGGLGYHIIDTNLDTKDYENN----------KPETTHLSAEKFNNELSADVGANSYIVL--SHDVHEQTVVSLTQKLIDTLKSKGYRAVTVECLGDAPEN------WYKAHHHHHH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8	SAM-T99	2j13A	0.212	0.246	3.018	threading_8	------------------------------------------------------FYLGDTK--------------------------------------------KKDIYLTFDNGYENGYTGILDVLKEKKVPATFFVTGHYIKTQKDLL-------------------LRMKDEG-HIIGNHSWSHPDFTAVN---------------------------DEKLREELTSVTEEIKKVTGKEVKYVRPPRGVFSERTLALTKEMGYYNVF--------------------------------------------------------------------------------------------------------------------------------------------------WSLAFLDWIHPGSILLLHAISKDNAEALAKIIDDLREK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9	MUSTER	1gjwA	0.122	0.841	0.738	threading_9	---------MLLREINRYCKEKATGKRIYAVPKLWIPGFFKKFDEKSGRCFVLGAEITDNQSREWDYSQPLSFLKGE-DWIKRSVVYGSLPRTTAAYHKGSGYYEENDVLGFREAGTFFKMMLLLPFVKSLGADAIYLSRMSDLFKKGDMELDERYHDPLLEPFKVDEEFKAFVEAGILDFIRTAARDSDLIREHPDVEELADYTPPRAEELPFKVPDEDELEIIYNK------ENVKRHLKK----FTLPPNLIDPQKWEKIKREGIITPPGFSDLINDPQPTWDDVTFLRLYLDHPEASKRF---LDPNQPP---YVLYDVIKASKFPGKEPN-RELWEYLAG--VIPHYQKKY------GIDGARLDMGHALP--KELLDLIIKNVKEYDPAFVMIAE---ELDM-----------EKDKASKEAGYDVILGSSWYFAGRVEEIGKLPDIAEELVLPFLASVET---PDTPRIAT------------------RKYASKMKKLAPFVTYFLPNSIPYV------NTGQEIGEKQPMNLGLDTDPNLRKVLSPTDEFFGKLAFFD---HYVLHWDSPDRGVLNFIKKLIKVRHEFLDFVLNGKFENLTTKYEKNG-------QKIV----------AANVG--------KEPEITGGR-VWNGKWSDEEK
10	SPARKS	2cc0a	0.172	0.286	1.486	threading_10	------------------------------------------------------------------------------------------------------AACNGYVGLTFDDGPSGSTQSLLNALRQNGLRATMFNQGQYAAQN-------------------PSLVRAQVDAG-MWVANHSYTHPHMTQLG---------------------------QAQMDSEISRTQQAIAGAGGGTPKLFRPPYGETNATLRSVEAKYGLTE-------VIWDVDSQD------WNNASTDAIVQAVSRLG-NGQVILMH--------DWPANTLAAIPRIAQTLAGKGLCSGMI---SPQTGRAVAP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.502 to 2gjxA SCOP code=c.1.8.6	TM-score=0.809 to 1qgkA SCOP code=a.118.1.1	TM-score=0.635 to 2iw0A SCOP code=c.6.2.3	TM-score=0.665 to 1qgkA SCOP code=a.118.1.1	TM-score=0.654 to 2iw0A SCOP code=c.6.2.3