Template-based Modeling Results for PERM_ECOLI

Submitted Primary Sequence

>Length 353
MLEMLMQWYRRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWPTVRLQSIGCSRRWATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAGIIDAMAENMRSRMLTMGDSVVKISLASLVGLLTIAVYLVLVPLMVFFLLKDKEQMLNAVRRVLPRNRGLAGQVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNYSLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAWPDGQIAQE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLEMLMQWYRRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWPTVRLQSIGCSRRWATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAGIIDAMAENMRSRMLTMGDSVVKISLASLVGLLTIAVYLVLVPLMVFFLLKDKEQMLNAVRRVLPRNRGLAGQVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNYSLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAWPDGQIAQE
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEECEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLEMLMQWYRRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWPTVRLQSIGCSRRWATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAGIIDAMAENMRSRMLTMGDSVVKISLASLVGLLTIAVYLVLVPLMVFFLLKDKEQMLNAVRRVLPRNRGLAGQVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNYSLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAWPDGQIAQE
22210121033211111000000000000000100000000000000000002100120231202222110111111101122222221210022012003201200320030012014312211221002100320222022002100310010010001000100000000000021132003002300231021002003200210110010100100000000000000010310000000000011011000000000000000121110110000000000010012000100001311300100000000000000100000000000000100022122232234
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLEMLMQWYRRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWPTVRLQSIGCSRRWATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAGIIDAMAENMRSRMLTMGDSVVKISLASLVGLLTIAVYLVLVPLMVFFLLKDKEQMLNAVRRVLPRNRGLAGQVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNYSLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAWPDGQIAQE
1	MUSTER	3ea5B	0.126	0.966	1.142	threading_1	ILEPVLEFVEQNITADNWRNREAAVMAFGSIM----DGPDKVQRTYYVHQALPSILNLMN----QSLQVKETTAWCIGRIADSVAESILPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEAPIYNFYPALVDGLIGAANDNEFNARASAFSALTTMVEYATVAETSASISTFVMDKLGQTMSVDENQLTEDAQSLQELQSNILTVLAAVIRKSPSSVEVADMLMGLFFRLLEKKVFYAISALAASLGFEKY---LETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFMMNVLA-SNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGT
2	SPARKS	2xwub	0.107	0.901	1.134	threading_2	VFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALLFDSSVEAIVNA-ISQ---------------------------PDAQRYVNTLLKLIPLVLGLQEQLRQAVQN-GDMETSHGICRIAVALGENHSRALLDQVEQSFLALVNMIMFCSSLTLTFWYTLQDQQVYRPVYFQLVKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLT----SYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLVLPLVL-HALG-NPELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTS
3	PROSPECT2	3a6pA1	0.083	0.992	1.792	threading_3	ALKFCEEFKEKEKTQVAIVRHFGLQILEHVVKFRWNG-MSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAEVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYAQANCRVGVAALNTLHITAENCKLLEILCLLLQELQLGAAECLLIARKPLMVLFGDVAMHYILSAAHYVFLKRLCQVLCALGNQLCALLGDSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGYLRASMTNLVKMGFPSK--TDSPSCEYSRFDFFNSSRAQQGEVMRLACRKTSFQMAGEWLKYQLSTF
4	PPA-I	1b3uA3	0.087	0.518	1.133	threading_4	---------------------------------------------------------------------------------------------------------GIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGEKLNSLCMAWLYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAG---DPVANVRFNVAKSLQKIGPILDNLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSLA--------------------------------------------------------------
5	MUSTER	1qgkA	0.113	0.980	1.114	threading_5	IVPHVLPFIKEHIKNYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM-SVVVRDTAAWTVGR-ICELLPYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADD--EEPATYCLSSSFELIVQKLLETTNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMER--LQQVLQMESHIQSSDRIQFNDLQSLLCATLQNVLRDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFLLLENLNVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQAS-QAQVDKS
6	SPARKS	1b3ua	0.110	0.875	1.068	threading_6	VKAELRQYFRNLCSDDTPMVRRAAASK-----------LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRL------------------LAVEACVNIAQLLP--QEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKDLVPAFQNLMAEVRAAASHKVKEFCLSADMSQILPCIKELVQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLK-------DECPEVRLNIISNLDCVNEVIGQLSQSLLPAIVELAEDAKWRVRLAIIYMPLLAGQLGVEFFDEKLNSLCMAWVYAIREAATSNLKKLVEKFG------KEWAHATIIPKVLAMSGDPN
7	PROSPECT2	1jdha	0.113	1.000	1.724	threading_7	LTKLLEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNEGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLALQKMVALLVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYYEKLLWTTSRVLKVLKPAIVEAGGMQALCLWTLEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVAGDREDITEPAICALRHLTSRHQEAEMAQNAVVVKLLHPPSHWPLIKATVGLIRNPANHAPLREQGAIPQFVEGVRMEEIVEGCTGALHINTIPLFVQENIQRVAAGVLCELAQDKEAAE
8	PPA-I	2qfcA	0.081	0.663	1.065	threading_8	----------------------------------------------------------------------------------------------------------AEKLGSEIKKIRVLRENICHQSEVSRIESGAMDILQGIAAKLIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNEKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-------------RYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEI
9	SPARKS	2bkub	0.138	0.926	1.062	threading_9	ILEPVLEFVEQNITAREAAVMAFGSIMKVQRTYYVHQA-LPSILNLMNLQVKETTAWCIGRISIDPQ-------------------QHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPYNFYPALVDGLIGAAIDNEFNARASAFSALTTMVEYATDTVAETSASISTFV-MDKLGQTMSQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEVADMLMGLFFRLLEKKEDDVFYAISALAASLKYLETF---SPYLLKALNQVDSPVSITAVGFIADISNSLEEDFMMNVLISNP-NARRELKPAVLSVFGDIASNIGADF-IPYLNDIMALCVAAQNTKPENG
10	PROSPECT2	1b3ua	0.076	1.000	1.717	threading_10	TRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLVRDKAVESLRAISHEHSPSDFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLPMVRRAAASKLGEFAKVLELLLPQEDLEALVMPTLRQAWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEKDNTIEHLLPLFLAQLKDCVNEVIGIRQLSQSLLPAIVELAEDARLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKVAKSLQKIGPILDNSTLQSE

Predicted Tertiary Structure


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TM-score=0.656 to 1ialA SCOP code=a.118.1.1	TM-score=0.428 to 1h6gA SCOP code=a.24.9.1	TM-score=0.589 to 1m8xA SCOP code=a.118.1.8	TM-score=0.606 to 1oyzA SCOP code=a.118.1.16	TM-score=0.708 to 1b3uA SCOP code=a.118.1.2