Template-based Modeling Results for PEPB_ECOLI

Submitted Primary Sequence

>Length 427
MTEAMKITLSTQPADARWGEKATYSINNDGITLHLNGADDLGLIQRAARKIDGLGIKHVQLSGEGWDADRCWAFWQGYKAPKGTRKVVWPDLDDAQRQELDNRLMIIDWVRDTINAPAEELGPSQLAQRAVDLISNVAGDRVTYRITKGEDLREQGYMGLHTVGRGSERSPVLLALDYNPTGDKEAPVYACLVGKGITFDSGGYSIKQTAFMDSMKSDMGGAATVTGALAFAITRGLNKRVKLFLCCADNLISGNAFKLGDIITYRNGKKVEVMNTDAEGRLVLADGLIDASAQKPEMIIDAATLTGAAKTALGNDYHALFSFDDALAGRLLASAAQENEPFWRLPLAEFHRSQLPSNFAELNNTGSAAYPAGASTAAGFLSHFVENYQQGWLHIDCSATYRKAPVEQWSAGATGLGVRTIANLLTA
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTEAMKITLSTQPADARWGEKATYSINNDGITLHLNGADDLGLIQRAARKIDGLGIKHVQLSGEGWDADRCWAFWQGYKAPKGTRKVVWPDLDDAQRQELDNRLMIIDWVRDTINAPAEELGPSQLAQRAVDLISNVAGDRVTYRITKGEDLREQGYMGLHTVGRGSERSPVLLALDYNPTGDKEAPVYACLVGKGITFDSGGYSIKQTAFMDSMKSDMGGAATVTGALAFAITRGLNKRVKLFLCCADNLISGNAFKLGDIITYRNGKKVEVMNTDAEGRLVLADGLIDASAQKPEMIIDAATLTGAAKTALGNDYHALFSFDDALAGRLLASAAQENEPFWRLPLAEFHRSQLPSNFAELNNTGSAAYPAGASTAAGFLSHFVENYQQGWLHIDCSATYRKAPVEQWSAGATGLGVRTIANLLTA
CCCCEEEEEECCCCCHHHCCCEEEEECCCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCEEEEECCCEEECCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCEEEHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCEECCCCCHHHHHHCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTEAMKITLSTQPADARWGEKATYSINNDGITLHLNGADDLGLIQRAARKIDGLGIKHVQLSGEGWDADRCWAFWQGYKAPKGTRKVVWPDLDDAQRQELDNRLMIIDWVRDTINAPAEELGPSQLAQRAVDLISNVAGDRVTYRITKGEDLREQGYMGLHTVGRGSERSPVLLALDYNPTGDKEAPVYACLVGKGITFDSGGYSIKQTAFMDSMKSDMGGAATVTGALAFAITRGLNKRVKLFLCCADNLISGNAFKLGDIITYRNGKKVEVMNTDAEGRLVLADGLIDASAQKPEMIIDAATLTGAAKTALGNDYHALFSFDDALAGRLLASAAQENEPFWRLPLAEFHRSQLPSNFAELNNTGSAAYPAGASTAAGFLSHFVENYQQGWLHIDCSATYRKAPVEQWSAGATGLGVRTIANLLTA
5542020100221022310230000022200001032221110022002403422032010101000021011012223233322201113133212210111010020011013000220002200210120033032320202002031033221100000021043201000010213344423210000020000111001021111011020010000000000000022203110100000011111130020110010220210101011131000000000102322120000000000000000022000000102200120120023332200200013201220313001022012111210000000001200432321000000000023231321121010100100011135
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTEAMKITLSTQPADARWGEKATYSINNDGITLHLNGADDLGLIQRAARKIDGLGIKHVQLSGEGWDADRCWAFWQGYKAPKGTRKVVWPDLDDAQRQELDNRLMIIDWVRDTINAPAEELGPSQLAQRAVDLISNVAGDRVTYRITKGEDLREQGYMGLHTVGRGSERSPVLLALDYNPTGDKEAPVYACLVGKGITFDSGGYSIKQTAFMDSMKSDMGGAATVTGALAFAITRGLNKRVKLFLCCADNLISGNAFKLGDIITYRNGKKVEVMNTDAEGRLVLADGLIDASAQKPEMIIDAATLTGAAKTALGNDYHALFSFDDALAGRLLASAAQENEPFWRLPLAEFHRSQLPSNFAELNNTGSAAYPAGASTAAGFLSHFVENYQQGWLHIDCSATYRKAPVEQWSAGATGLGVRTIANLLTA
1	MUSTER	3ij3A	0.323	0.965	3.025	threading_1	KKNFIPIQPMMPDELPDWGTICSIPESTGAVLLGVSDYEYSWDFGGLSKVLPPEDDEYYERALLAFGLG-SYQFNAYRKRSPYLAKLFLPQ---AHRKRVTDWLTTIYLIRDLINTPAEDMGPSELAQAVKHVAKEFE---AKVKIIESKDLET-EFPAIYAVGRAGSRPPLLIDLKWGD---IKAP-KVTLVGKGVCFDSGGLDIKTPGGMLLMKKDMGGAAHALGLARMIMLQQLPVRLRLLIPAVENAIGSRSYRPGDVVQTRARKTIEITNTDAEGRVVLADALAEAVKEDPDLIIDFSTLTGAARIALGPNLPALFANQDSLAQALIDASLKTDDPLWRLPLFQPYRNYLKSEVADLTNSSQN-RMAGAITAALFLQHFVSD-QIPWAHFDIFAWNL-EDLPGRPIGGEAMALRAVFHYLEQ
2	SPARKS	3t8wa	0.284	0.965	6.627	threading_2	VKLGTSKHFYMFNDNKNSVAVGYVGCGSVA---DLSEADMKRVVLSLVTMLHDNKLSNLFRFFLETLFYEYMTDERFKSTDKNVNGVYINNADTEEVEKARVYYFGTYYASQLIAAPSNYCNPVSLSNAAVELAQKLN---LEYKILGVKELEELKMGAYLSVGKGSMYPNKFIHLTYKSKGDVKK--KIALVGKGITFDSGGYNLKPGSMIDLMKFDMSGCAAVLGCAYCVGTLKPEVEIHFLSAVCENMVSKNSYRPGDIITASNGKTIEVGNTDAEGRLTLADALVYAEKLGVDYIVDIATLTGAMLYSLGTSYAGVFGNNEELINKILQSSKTSNEPVWWLPIINEYRATLNSKYADINQIS-SSVKASSIVASLFLKEFVQNT--AWAHIDIAGVSWNFK----ARKPKGFGVRLLTEFVLN
3	PROSPECT2	3ij3A	0.316	0.965	5.435	threading_3	AKNFIPIQPMMSGFVGLAGTICSIPESTGAVLLGVSDYEYSWDFGGLSKVLPPEDDEYYERALLAFGL-GSYQFNAYRKRSPYLAKLFLP---QAHRKRVTDWLTTIYLIRDLINTPAEDMGPSELAQAVKHVAKEFE---AKVKIIESKDLET-EFPAIYAVGRAGSRPPLLIDLKWGDIKAP----KVTLVGKGVCFDSGGLDIKTPGGMLLMKKDMGGAAHALGLARMIMLQQLPVRLRLLIPAVENAIGSRSYRPGDVVQTRARKTIEITNTDAEGRVVLADALAEAVKEDPDLIIDFSTLTGAARIALGPNLPALFANQDSLAQALIDASLKTDDPLWRLPLFQPYRNYLKSEVADLTNSSQNR-MAGAITAALFLQHFVSD-QIPWAHFDIFAWNL-EDLPGRPIGGEAMALRAVFHYLER
4	PPA-I	2ewbA	0.302	0.986	5.067	threading_4	PPLKAGKTRTFYGLHEDFPSVVVVGLGKKTAGIDEQENNIRAAVAAGCRQIQDLEIPDAQAAAEGAVLG-LYEYDDLKQKRKVVVSAKLHGSEQEAWQRGVLFASGQNLARRLMETPANEMTPTKFAEIVEENLKSASI-KTDVFIRPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGSPNASEPP-LVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYAHTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVDCQLADVNNIG-KYRSAGACTAAAFLKEFVTHP--KWAHLDIAGVMTKDEVPYLRKGMAGRPTRTLIEFLFR
5	HHPRED-l	1gyt_A	0.317	0.977	5.021	threading_5	SDGYISALLRRGELEGKPGQTLLLHHVPNVLLIGCGKEREERQIQKTINTLNDTGSMEAVCFLTEWKKETLYSFDQLKTNKSEPRKMVFNVPTRRAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYS-KNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARP-IVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIG--GRPGGAITAGCFLSRFTRK--YNWAHLDIAGTAWRSGK---AKGATGRPVALLAQFLL-
6	HHPRED-g	1gyt_A	0.321	0.979	4.253	threading_6	SDGYISALLRRGELEGKPGQTLLLHHVERILLIGCGKERELQVIQKTINTLNDTGSMEAVCFLTEWKVETLYSFDQLKTNKSPLRKMVFNVPTERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYS-KNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARP-IVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGR--PGGAITAGCFLSRFTRKYN--WAHLDIAGTAWRSGK---AKGATGRPVALLAQFLLN
7	SP3	3t8wa	0.289	0.958	6.567	threading_7	LGTSKHFYMFNDNKNSVA--VGYVGCGSVA---DLSEADMKRVVLSLVTMLHDNKLSLFRFFLETLFYE-YMTDERFKSTDKNVNGVYINNADKEEVEKARVYYFGTYYASQLIAAPSNYCNPVSLSNAAVELAQKLN---LEYKILGVKELEELKMGAYLSVGKGSMYPNKFIHLTYKSKGDVKK--KIALVGKGITFDSGGYNLKPGSMIDLMKFDMSGCAAVLGCAYCVGTLKPEVEIHFLSAVCENMVSKNSYRPGDIITASNGKTIEVGNTDAEGRLTLADALVYAEKLGVDYIVDIATLTGAMLYSLGTSYAGVFGNNEELINKILQSSKTSNEPVWWLPIINEYRATLNSKYADINQIS-SSVKASSIVASLFLKEFVQNT--AWAHIDIAGVSWNFK----ARKPKGFGVRLLTEFVLN
8	SAM-T99	1gytL	0.299	0.979	4.230	threading_8	LLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADS-YSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARP-IVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRP--GGAITAGCFLSRFTRK--YNWAHLDIAGTAWRS---GKAKGATGRPVALLAQFLLN
9	MUSTER	2ewbA	0.306	0.986	2.973	threading_9	PPLKAGKTRTFYGLHEDFPSVVVVGLGKKTENWHEGKENIRAAVAAGCRQIQDLEIPSAQAAAEGAVLG-LYEYDDLKQKRKVVVSAKLHGSDQEAWQRGVLFASGQNLARRLMETPANEMTPTKFAEIVEENLKSAS-IKTDVFIRPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGSPNASEPP-LVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYAHTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVDCQLADVNNIG-KYRSAGACTAAAFLKEFVTHP--KWAHLDIAGVMTKDEVPYLRKGMAGRPTRTLIEFLFR
10	SPARKS	3kqxa	0.280	0.960	6.608	threading_10	LGTSKHFYMFNDNKNSV--AVGYVGCGSVA---DLSEADMKRVVLSLVTMLHDNKLSNLFRFFLETLFYEYMTDERFKSTDEYIKHLGVADTYKEEVEKARVYYFGTYYASQLIAAPSNYCNPVSLSNAAVELAQKLN---LEYKILGVKELEELKMGAYLSVGKGSMYPNKFIHLTYKSKGDVKK--KIALVGKGITFDSGGYNLKPGSMIDLMKFDMSGCAAVLGCAYCVGTLKPEVEIHFLSAVCENMVSKNSYRPGDIITASNGKTIEVGNTDAEGRLTLADALVYAEKLGVDYIVDIATLTGAMLYSLGTSYAGVFGNNEELINKILQSSKTSNEPVWWLPIINEYRATLNSKYADINQIS-SSVKASSIVASLFLKEFVQNT--AWAHIDIAGVSWNFK----ARKPKGFGVRLLTEFVLN

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.848 to 2ewbA SCOP code=c.56.5.3	TM-score=0.916 to 2ewbA SCOP code=c.56.5.3	TM-score=0.831 to 2ewbA SCOP code=c.56.5.3	TM-score=0.851 to 2ewbA SCOP code=c.56.5.3	TM-score=0.903 to 2ewbA SCOP code=c.56.5.3