Template-based Modeling Results for PDXY_ECOLI

Submitted Primary Sequence

>Length 287
MMKNILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNTVQFSNHTQYGKWTGCVMPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVMGHPEKGCIVAPGVAEFHVRHGLPASDIIAPNLVELEILCEHAVNNVEEAVLAARELIAQGPQIVLVKHLARAGYSRDRFEMLLVTADEAWHISRPLVDFGMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIMVTTKAMQEYELQVVAAQDRIAKPEHYFSATKL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MMKNILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNTVQFSNHTQYGKWTGCVMPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVMGHPEKGCIVAPGVAEFHVRHGLPASDIIAPNLVELEILCEHAVNNVEEAVLAARELIAQGPQIVLVKHLARAGYSRDRFEMLLVTADEAWHISRPLVDFGMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIMVTTKAMQEYELQVVAAQDRIAKPEHYFSATKL
CCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCHHHHHCCCEEEEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MMKNILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNTVQFSNHTQYGKWTGCVMPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVMGHPEKGCIVAPGVAEFHVRHGLPASDIIAPNLVELEILCEHAVNNVEEAVLAARELIAQGPQIVLVKHLARAGYSRDRFEMLLVTADEAWHISRPLVDFGMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIMVTTKAMQEYELQVVAAQDRIAKPEHYFSATKL
54310000101102020000000100330101000000000011232120100101221013002001312312201000001101230021001003201321331100000000123401101210011103200210100001121001004321321320120032004200100002212322224220100001332011011110212132110000000000001012122032002100200120011033143210100101320231212010223
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MMKNILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNTVQFSNHTQYGKWTGCVMPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVMGHPEKGCIVAPGVAEFHVRHGLPASDIIAPNLVELEILCEHAVNNVEEAVLAARELIAQGPQIVLVKHLARAGYSRDRFEMLLVTADEAWHISRPLVDFGMRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIMVTTKAMQEYELQVVAAQDRIAKPEHYFSATKL
1	MUSTER	1vi9A	0.950	0.969	2.947	threading_1	-LKNILAIQSHVVYGHAGNSAAEFPRR-LGANVWPLNTVQFSNHTQYGKWTG--VPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVGHPEKG-CIVAPGVAEFHVRHGLPASDIIAPNLVELEILCEHAVNNVEEAVLAARELIAQGPQIVLVKHLARAGYSRDRFE-LLVTADEAWHISRPLVDF-GRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIVTTK--AQEYELQVVAAQDRIAKPEHYFSATKL
2	SPARKS	1lhpa	0.309	0.993	4.543	threading_2	-ECRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYSHWKGQVLNSDELQELYDGLKL-NHVNQYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVMGDQRGAMYVPDDLLPVYREKVVPVADIITPNQFEAELLTGRKIHSQEEALEVMDMLHSMGPDTVVITSSNLLSPRGSDYLMALGSQRTRGSVVTQRIRMEDAVFVGTGDLFAAMLLAWTHKHPNLKVACEKTVSAMHHVLQRTIKCAQLELRMVQSKKDIESPEIVVQATVL
3	PROSPECT2	2ddmA	0.304	0.906	3.762	threading_3	LQADIVAVQSQVVYGSVGNSIAVPAIKQNGLNVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNIFELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVVTS--------QEMQVVVVTADSVNVISHSRVK---TDLKGTGDLFCAQLISGLLKGKALTDAVHRAGLRVLEVMRYTQQHESDELILPP----------------L
4	PPA-I	1vi9A	0.939	0.969	3.440	threading_4	-LKNILAIQSHVVYGHAGNSAAEFPRR-LGANVWPLNTVQFSNHTQYGKWTG--VPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVGHPEKG-CIVAPGVAEFHVRHGLPASDIIAPNLVELEILCEHAVNNVEEAVLAARELIAQGPQIVLVKHLARAGYSRD-RFELLVTADEAWHISRPLVDF-GRQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIVTTK--AQEYELQVVAAQDRIAKPEHYFSATKL
5	HHPRED-l	2ddm_A	0.300	0.906	4.429	threading_5	LQADIVAVQSQVVYGSVGNSIAVPAIKQNGLNVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNIFELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVVTS--------QEMQVVVVTADSVNVISHSRVK---TDLKGTGDLFCAQLISGLLKGKALTDAVHRAGLRVLEVMRYTQQHESDELILPPL----------------
6	HHPRED-g	2ddm_A	0.300	0.906	4.934	threading_6	LQADIVAVQSQVVYGSVGNSIAVPAIKQNGLNVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNIFELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVVTS--------QEMQVVVVTADSVNVISHSRVKT---DLKGTGDLFCAQLISGLLKGKALTDAVHRAGLRVLEVMRYTQQHESDELILPPL----------------
7	SP3	1lhpa	0.312	0.993	4.756	threading_7	-ECRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYSHWKGQVLNSDELQELYDGLKL-NHVNQYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVMGDQRGAMYVPDDLLPVYREKVVPVADIITPNQFEAELLTGRKIHSQEEALEVMDMLHSMGPDTVVITSSNLLSPRGSDYLMALGSQRTRGSVVTQRIRMEMHVFVGTGDLFAAMLLAWTHKHPNLKVACEKTVSAMHHVLQRTIKCAQLELRMVQSKKDIESPEIVVQATVL
8	SAM-T99	2f7kA	0.298	0.899	4.603	threading_8	---RVLSIQSHVIRGYVGNRAATFPLQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSDELQELYEGLRLNN-MNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKEGSMYVPEDLLPVYKEKVVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGPDTVVITSSDLPSPQGSNYLIVLGSQRRRIRMDIRKVD---AVFVGTGDLFAAMLLAWTHKPNNLKVACEKTVSTLHHVLQRTIQCAKAQ----------------------
9	MUSTER	2ddmB	0.293	0.902	2.609	threading_9	LQADIVAVQSQVVYGSVGNSIAVPAIKQNGLNVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGD------IKPDLPEAYRQYLLPLAQGITPNIFELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVVTSASGEN---QEMQVVVVTADSVNVISHSRVKT---DLKGTGDLFCAQLISGLLKGKALTDAVHRAGLRVLEVMRYTQQHESDELILPPL----------------
10	SPARKS	1vi9a	0.950	0.969	4.415	threading_10	-LKNILAIQSHVVYGHAGNSAAEF-PRRLGANVWPLNTVQFSNHTQYGKWTG--VPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVGHPEKG-CIVAPGVAEFHVRHGLPASDIIAPNLVELEILCEHAVNNVEEAVLAARELIAQGPQIVLVKHLARAGYSRDRF-ELLVTADEAWHISRPLVDFG-RQPVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIVTTK--AQEYELQVVAAQDRIAKPEHYFSATKL

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.978 to 1vi9A TM-score=0.963 to native SCOP code=c.72.1.5	TM-score=0.978 to 1vi9A TM-score=0.961 to native SCOP code=c.72.1.5	TM-score=0.882 to 1vi9A TM-score=0.889 to native SCOP code=c.72.1.5	TM-score=0.859 to 1vi9A TM-score=0.865 to native SCOP code=c.72.1.5	TM-score=0.977 to 1vi9A TM-score=0.960 to native SCOP code=c.72.1.5

Experimental Structure

Download 1td2A

SCOP code=c.72.1.5