Template-based Modeling Results for PDXH_ECOLI

Submitted Primary Sequence

>Length 218
MSDNDELQQIAHLRREYTKGGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSDNDELQQIAHLRREYTKGGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP
CCCCCCCCCHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHEEEEECCCCCEEEEEEEEEEECCCCEEEEECCCCHHHHHHHHCCEEEEEEEECCCCEEEEEEEEEEECCHHHHHHHHHCCCHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSDNDELQQIAHLRREYTKGGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP
54434323210200431342203332022100200220012014132221100000001441201000000120144000000111132012024112000000022121100010202202221013102221330100000053124121321012102202331332312113100001000100101221442110000011333202112114
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSDNDELQQIAHLRREYTKGGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP
1	MUSTER	1jnwA	0.976	0.963	4.051	threading_1	----DELQQIAHLRREYTKGGLRRRDLPADPLTLFERWLSQACEAKLADPTA-VVATVDEHGQPYQRIVLLKHYDEK-GVFYTNLGSRKAHQIENNPRVSLLFPWHTLE-RQVVIGKAERLSTLEVK-YFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP
2	SPARKS	2a2ja	0.402	0.913	6.178	threading_2	--------------PEKDGGDLDFDWLDDGWLTLLRRWLNDAQRAGVSEPNAMVLATVA-DGKPVTRSVLCKILDESGVAFFTSYTSAKGEQLAVTPYASATFPWYQLGRQAHVQGPVSKVSTEEIFTYWSMRPRGAQLGAWASQQSRPVGSRAQLDNQLAEVTRRFADDQIPVPPGWGGYRIAPEIVEFWQGRENRMHNRIRVA----NGRLERLQP
3	PROSPECT2	1t9mA	0.304	0.936	4.549	threading_3	LTGTI------------EAPFPEFEAPPANPMEVLRNWLERARRYGVREPRALALATVDGQGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESSQQIILNGRAERLPDERADAQWLSRPYQTHPMSIASRQSETLADIHALRAEARRLAE--TDGPLPRPPGYCLFELCLESVEFWGNGTERLHERLRYDRDEGGWKHRYLQP
4	PPA-I	1ty9B	0.299	0.936	6.354	threading_4	LTGTLDA------------PFPEYQTLPADPMSVLHNWLERARRVGIREPRALALATADSQGRPSTRIVVISEISDAGVVFSTHAGSQKGRELLHNPWASGVLYWRETSQQIILNGQAVRLPNAKADDAWLKRPYATHPMSSVSRQSEELQDVQAMRNAARQLAELQ--GPLPRPEGYCVFELRLESLEFWGNGQERLHERLRYDRSDTGWNVRRLQP
5	HHPRED-l	1nrg_A	0.426	0.894	5.561	threading_5	----------------------EETHLTSDPVKQFAAWFEEAVQCDIGEANAMCLATCTRDGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDRIVFRRGEEDWLYERLA-
6	HHPRED-g	1nrg_A	0.429	0.899	5.412	threading_6	----------------------EETHLTSDPVKQFAAWFEEAVQCDIGEANAMCLATCTRDGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDRIVFRRGEEDWLYERLAP
7	SP3	2a2ja	0.402	0.913	5.996	threading_7	--------------PEKDGGDLDFDWLDDGWLTLLRRWLNDAQRAGVSEPNAMVLATVA-DGKPVTRSVLCKILDESGVAFFTSYTSAKGEQLAVTPYASATFPWYQLGRQAHVQGPVSKVSTEEIFTYWSMRPRGAQLGAWASQQSRPVGSRAQLDNQLAEVTRRFADQQIPVPPGWGGYRIAPEIVEFWQGRENRMHNRIRVAN----GRLERLQP
8	SAM-T99	1nrgA	0.421	0.904	6.321	threading_8	---------------------EETHLTSLDPVKQFAAWFEEAVQPDIGEANAMCLATCTRDGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDRIVFRRGEEDWLYERLAP
9	MUSTER	2a2jA	0.402	0.913	3.962	threading_9	--------------PEKDGGDLDFDWLDDGWLTLLRRWLNDAQRAGVSEPNAMVLATVA-DGKPVTRSVLCKILDESGVAFFTSYTSAKGEQLAVTPYASATFPWYQLGRQAHVQGPVSKVSTEEIFTYWSMRPRGAQLGAWASQQSRPVGSRAQLDNQLAEVTRRFADQQIPVPPGWGGYRIAPEIVEFWQGRENRMHNRIRVAN----GRLERLQP
10	SPARKS	1t9ma	0.309	0.936	5.936	threading_10	LTGTIEA------------PFPEFEAPPANPMEVLRNWLERARRYGVREPRALALATVDGQGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESSQQIILNGRAERLPDERADAQWLSRPYQTHPMSIASRQSETLADIHALRAEARRLAET--DGPLPRPPGYCLFELCLESVEFWGNGTERLHERLRYDRDEGGWKHRYLQP

Predicted Tertiary Structure


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TM-score=0.952 to 1jnwA TM-score=0.969 to native SCOP code=b.45.1.1	TM-score=0.940 to 1jnwA TM-score=0.957 to native SCOP code=b.45.1.1	TM-score=0.942 to 2a2jA TM-score=0.884 to native SCOP code=b.45.1.1	TM-score=0.927 to 1ty9B TM-score=0.869 to native SCOP code=b.45.1.1	TM-score=0.955 to 1ty9B TM-score=0.871 to native SCOP code=b.45.1.1

Experimental Structure

Download 1jnwA

SCOP code=b.45.1.1