Template-based Modeling Results for PBP7_ECOLI

Submitted Primary Sequence

>Length 310
MPKFRVSLFSLALMLAVPFAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPEMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHNVSTARDLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTWIETGKVMPVPAAALSYKKQKAAQMAAAGQTAQND
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MPKFRVSLFSLALMLAVPFAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPEMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHNVSTARDLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTWIETGKVMPVPAAALSYKKQKAAQMAAAGQTAQND
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECHHHHCCCCCCEEEECCCCEEEHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHCEEEEEEEEECCCCCEEEEECCCHHHCCCCCCCCEEECCCCCCCCCEEEEEEEECCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHCCCCCCCCC
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MPKFRVSLFSLALMLAVPFAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPEMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHNVSTARDLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTWIETGKVMPVPAAALSYKKQKAAQMAAAGQTAQND
5331110010000000000001001312222222313020100000003123001132332221000001000000002031323220201222124241010102222201011001000010112000000230210031003000110410103101011010011410000100010010033122003011121120112333220102010200132122021000101320100000101134110000002021422102100101200221221212211222332310212222322444
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MPKFRVSLFSLALMLAVPFAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPEMKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHNVSTARDLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTWIETGKVMPVPAAALSYKKQKAAQMAAAGQTAQND
1	MUSTER	3bebA1	0.233	0.803	3.157	threading_1	--------------------------NIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAKFKETDLVTIGNDAWATGGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDDGQYSSARDMALIGQALIRDPNEYSIYKEK--EFTFNG----IRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFF-----------------------------
2	SPARKS	1hd8a	0.225	0.861	5.550	threading_2	-------------------------LNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAKFKETDLVTIGN------------LKPGMQVPVSQLIRDINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADQYSSARDMALIGQALIRVPNEYSIY--KEKEFTFNG----IRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETEFASEPVWFGDSDRASLGVDKDVYRGR
3	PROSPECT2	3it9A1	0.273	0.781	4.528	threading_3	-------------------------------TVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQAKIKLTDMVTVGKDAWATRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDPGQFSTARDMALLGKALIHVPEEYAIHKEKEFTF------NKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGF-------------------------------R
4	PPA-I	3bebA1	0.233	0.803	5.555	threading_4	--------------------------NIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAKFKETDLVTIGNDAWATKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDDGQYSSARDMALIGQALIRDPNEYSIYKEK--EFTFNG----IRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFF-----------------------------
5	HHPRED-l	1es5_A	0.269	0.790	3.983	threading_5	----------------------------------KPTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVLAQNLNLDAKVTIQKAYSVANNASQAHLIVGDKVTVRQLLYGLMLPSGCDAAYALADKYGSGVKSFIGKMNTAATNLGLHNTHFDSFDGIGGANYSTPRDLTKIASSAMKNSTFRTVVKTKAYTAKTVTKTTMDTWKNTNGLLSSY-SGAIGVKTGAGPEAKYCLVFAATRGGKTVIGTVLASTSIPARESDATKIMNYGFAL------------------------------
6	HHPRED-g	3a3j_A	0.234	0.884	3.703	threading_6	-------------------------------GVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGQGKIHNTDMVTIGESAWGRPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDPNQYSSARDMAIIGAHIIR-DLPEEYKIYSEKDFTFNK----IKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTNNMRLISVVMGVPTYKGREVESKKLLQWGFANFETEISEQRVYYGDKNSVKLGAFMDHFITI
7	SP3	3mfda	0.224	0.823	5.627	threading_7	----------------------------------AIDVSAKSAIIIDGASGRVLYAKDEHQKRRIASITKITAVLAIESGK---DQTVTVSANAV-RTEGSAIYLTEGQKVKLKDLVYG-LLRSGNDAAVAIAEHVGGSLDGFV--YNQKAEQLGK-NTRFQNPHGLDENHYSTAYDAILTKYAK--LKDYQKISGTK----IYKAETE-SVWKNKNKLLTLYP-YSTGGKTGYTKLAKRTLVSTASKDGIDLIAVTINDPN-----DWDDHKFNYVFEHLIAKKGDIPKLKGTFYESKAFIKRDITEKE
8	SAM-T99	3itbD	0.246	0.890	4.563	threading_8	----------------------------AEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALIKLTDMVTVGKDAWALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDPGQFSTARDMALLGKALIDVPEEYAIHKEKEFTFNK------IRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGA
9	MUSTER	3itbD1	0.279	0.797	3.146	threading_9	----------------------------AEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQAKIKLTDMVTVGKDAWATRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDPGQFSTARDMALLGKALIHDPEEYAIH--KEKEFTFNK----IRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFF-----------------------------
10	SPARKS	1hd8a2	0.249	0.765	5.462	threading_10	-------------------------LNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAKFKETDLVTIGN------------LKPGMQVPVSQLIRDINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDDGQYSSARDMALIGQALIRVPNEYSIY--KEKEFTFNG----IRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRF------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.871 to 3bebA SCOP code=b.105.1.1	TM-score=0.863 to 3bebA SCOP code=b.105.1.1	TM-score=0.839 to 3bebA SCOP code=b.105.1.1	TM-score=0.849 to 3bebA SCOP code=b.105.1.1	TM-score=0.872 to 3bebA SCOP code=b.105.1.1