Template-based Modeling Results for PAL_ECOLI

Submitted Primary Sequence

>Length 173
MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGMLGAGTGMDANGGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRRAVLVY
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGMLGAGTGMDANGGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRRAVLVY
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCCCCCCCCCCHHHHHHCCCEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGMLGAGTGMDANGGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRRAVLVY
53222101000000000000101233322331231111111112122132322232113121211223210001013230223003002100300331331201020001351222001100220020013102222022300101011433211213232112311211112
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGMLGAGTGMDANGGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRRAVLVY
1	MUSTER	2aizP	0.590	0.775	3.445	threading_1	---------------------CSSSNNDAAGNGAAQTFGGYS------------------VADLQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVDAGKLGTVSYGEEKPAVLGHDEAAYSKNRRAVLAY
2	SPARKS	2kgwa	0.273	0.740	3.566	threading_2	--------------------------------------APPGPPASGPCADL-------QSAINAVTGGPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV
3	PROSPECT2	2aizP	0.590	0.775	3.012	threading_3	---------------------CSSSNNDAAGNGAAQTFGGYS------------------VADLQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVDAGKLGTVSYGEEKPAVLGHDEAAYSKNRRAVLAY
4	PPA-I	2aizP	0.590	0.775	3.841	threading_4	---------------------CSSSNNDAAGNGAAQTFGGYS------------------VADLQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVDAGKLGTVSYGEEKPAVLGHDEAAYSKNRRAVLAY
5	HHPRED-l	2aiz_P	0.594	0.769	3.757	threading_5	---------------------CSSSNNDAAGNGAAQT-----------FGGYS-------VADLQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVDAGKLGTVSYGEEKPAVLGHDEAAYSKNRRAVLA-
6	HHPRED-g	2aiz_P	0.597	0.775	3.557	threading_6	---------------------CSSSNNDAAGNGAA-----------QTFGGYSV-------ADLQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVDAGKLGTVSYGEEKPAVLGHDEAAYSKNRRAVLAY
7	SP3	2kgwa	0.273	0.740	3.779	threading_7	--------------------------------------APPGPPASGPCADL-------QSAINAVTGGPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV
8	SAM-T99	2w8bG	1.000	0.618	5.220	threading_8	------------------------------------------------------------------QNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRRAVLVY
9	MUSTER	2w8bG	1.000	0.618	3.099	threading_9	------------------------------------------------------------------QNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRRAVLVY
10	SPARKS	2lbta	0.269	0.751	3.499	threading_10	------------------------------------GQAPPGPPASGPCADL-------QSAINAVTGGPIAFGNDGASLIPAAYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVV

Predicted Tertiary Structure


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TM-score=0.841 to 2aizP TM-score=0.895 to native SCOP code=d.79.7.1	TM-score=0.855 to 2aizP TM-score=0.900 to native SCOP code=d.79.7.1	TM-score=0.643 to 2aizP TM-score=0.862 to native SCOP code=d.79.7.1	TM-score=0.841 to 2aizP TM-score=0.895 to native SCOP code=d.79.7.1	TM-score=0.841 to 2aizP TM-score=0.895 to native SCOP code=d.79.7.1

Experimental Structure

Download 1oapA

SCOP code=d.79.7.1