Template-based Modeling Results for OMPC_ECOLI

Submitted Primary Sequence

>Length 367
MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYFSDNKDVDGDQTYMRLGFKGETQVTDQLTGYGQWEYQIQGNSAENENNSWTRVAFAGLKFQDVGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFGLVDGLNFAVQYQGKNGNPSGEGFTSGVTNNGRDALRQNGDGVGGSITYDYEGFGIGGAISSSKRTDAQNTAAYIGNGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSLGWANKAQNFEAVAQYQFDFGLRPSLAYLQSKGKNLGRGYDDEDILKYVDVGATYYFNKNMSTYVDYKINLLDDNQFTRDAGINTDNIVALGLVYQF
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYFSDNKDVDGDQTYMRLGFKGETQVTDQLTGYGQWEYQIQGNSAENENNSWTRVAFAGLKFQDVGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFGLVDGLNFAVQYQGKNGNPSGEGFTSGVTNNGRDALRQNGDGVGGSITYDYEGFGIGGAISSSKRTDAQNTAAYIGNGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSLGWANKAQNFEAVAQYQFDFGLRPSLAYLQSKGKNLGRGYDDEDILKYVDVGATYYFNKNMSTYVDYKINLLDDNQFTRDAGINTDNIVALGLVYQF
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCEEEEEEECEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCEEEEECCCCCEEEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCCEEEEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYFSDNKDVDGDQTYMRLGFKGETQVTDQLTGYGQWEYQIQGNSAENENNSWTRVAFAGLKFQDVGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFGLVDGLNFAVQYQGKNGNPSGEGFTSGVTNNGRDALRQNGDGVGGSITYDYEGFGIGGAISSSKRTDAQNTAAYIGNGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSLGWANKAQNFEAVAQYQFDFGLRPSLAYLQSKGKNLGRGYDDEDILKYVDVGATYYFNKNMSTYVDYKINLLDDNQFTRDAGINTDNIVALGLVYQF
4322100100000000000100301333312010101010101012343232322200000202220233020001010101032233332121100000022321000100111000100000010112110111011111322110100010221221110000001020422322122122112110220133212000000011131100000000032232211001112132010000001011220100000110111242222110020100100010102211210000000202222322333110100000010101410100010100123333123322232321000000021
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYFSDNKDVDGDQTYMRLGFKGETQVTDQLTGYGQWEYQIQGNSAENENNSWTRVAFAGLKFQDVGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFGLVDGLNFAVQYQGKNGNPSGEGFTSGVTNNGRDALRQNGDGVGGSITYDYEGFGIGGAISSSKRTDAQNTAAYIGNGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSLGWANKAQNFEAVAQYQFDFGLRPSLAYLQSKGKNLGRGYDDEDILKYVDVGATYYFNKNMSTYVDYKINLLDDNQFTRDAGINTDNIVALGLVYQF
1	MUSTER	2ixxA	0.913	0.943	3.017	threading_1	---------------------AEVYNKDGNKLDLYGKVDGLHYFSDDKSVDGDQTYMRLGFKGETQVTDQLTGYGQWEYQIQGNAPESENNSWTRVAFAGLKFQDIGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFGLVDGLNFAVQYQGQNGSVSGDFTGHGITNNGRKALRQNGDGVGGSITYDYEGFGVGAAVSSSKRTWDQNNTGLIGTGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSLGWANKAQNFEAVAQYQFDFGLRPSVAYLQSKGKNLGRNYDDEDILKYVDVGATYYFNKNMSTYVDYKINLLDDNQFTRAAGINTDDIVALGLVYQF
2	SPARKS	1hxxa	0.630	0.891	8.520	threading_2	---------------------AEIYNKDGNKVDLYGKAVGLHYFSKGNGENGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADGNKTRLAFAGLKYADVGSFDYGRNYGVVFDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARR--------------SNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQP-LGNGKKAEQWATGLKYDANNIYLAANYGETRNATPINTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVE-GIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDN---KLGVGSDDTVAVGIVYQF
3	PROSPECT2	3nsgA	0.541	0.891	3.908	threading_3	----------------------EIYNKDGNKLDLYGKAVGRHVWTTTGDKNADQTYAQIGFKGETQINTDLTGFGQWEYRTKADRAEGEQQNLVRLAFAGLKYAEVGSIDYGRNYGIVYDVESYTDAPYFSGETWGGATDNYTSRAGGLLTYRNSDFFGLVDGLSFGIQYQGKNQDNHS-------------INSQNGDGVGYTAYEF-DGFGVTAAYSNSKRTNDQ--QDRDGNGDRAESRAVGAKYDANNVYLAAVYAETRNSIVENTVTEANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNN-VWVDYRFNLLDENDYSS-SYVGTDDQAAVGITYQF
4	PPA-I	2ixxA	0.916	0.943	3.497	threading_4	---------------------AEVYNKDGNKLDLYGKVDGLHYFSDDKSVDGDQTYMRLGFKGETQVTDQLTGYGQWEYQIQGNAPESENNSWTRVAFAGLKFQDIGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFGLVDGLNFAVQYQGQNGSVSGENDGHGITNNGRKALRQNGDGVGGSITYDYEGFGVGAAVSSSKRTWDQNNTGLIGTGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSLGWANKAQNFEAVAQYQFDFGLRPSVAYLQSKGKNLGRNYDDEDILKYVDVGATYYFNKNMSTYVDYKINLLDDNQFTRAAGINTDDIVALGLVYQF
5	HHPRED-l	2j1n_A	1.000	0.940	6.116	threading_5	---------------------AEVYNKDGNKLDLYGKVDGLHYFSDNKDVDGDQTYMRLGFKGETQVTDQLTGYGQWEYQIQGNSAENENNSWTRVAFAGLKFQDVGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFGLVDGLNFAVQYQGKNGNPSGEGFTSGVTNNGRDALRQNGDGVGGSITYDYEGFGIGGAISSSKRTDAQNTAAYIGNGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSLGWANKAQNFEAVAQYQFDFGLRPSLAYLQSKGKNLGRGYDDEDILKYVDVGATYYFNKNMSTYVDYKINLLDDNQFTRDAGINTDNIVALGLVYQ-
6	HHPRED-g	2j1n_A	1.000	0.943	6.033	threading_6	---------------------AEVYNKDGNKLDLYGKVDGLHYFSDNKDVDGDQTYMRLGFKGETQVTDQLTGYGQWEYQIQGNSAENENNSWTRVAFAGLKFQDVGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFGLVDGLNFAVQYQGKNGNPSGEGFTSGVTNNGRDALRQNGDGVGGSITYDYEGFGIGGAISSSKRTDAQNTAAYIGNGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSLGWANKAQNFEAVAQYQFDFGLRPSLAYLQSKGKNLGRGYDDEDILKYVDVGATYYFNKNMSTYVDYKINLLDDNQFTRDAGINTDNIVALGLVYQF
7	SP3	1hxxa	0.636	0.891	7.553	threading_7	---------------------AEIYNKDGNKVDLYGKAVGLHYFSKGNGENGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVFDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTA--------------RRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQE-AQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVE-GIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNK---LGVGSDDTVAVGIVYQF
8	SAM-T99	2ixxA	0.908	0.943	6.655	threading_8	---------------------AEVYNKDGNKLDLYGKVDGLHYFSDDKSVDGDQTYMRLGFKGETQVTDQLTGYGQWEYQIQGNAPESENNSWTRVAFAGLKFQDIGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFGLVDGLNFAVQYQGQNGENDPDFTGHGITNNGRKALRQNGDGVGGSITYDYEGFGVGAAVSSSKRTWDQNNTGLIGTGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSLGWANKAQNFEAVAQYQFDFGLRPSVAYLQSKGKNLGRNYDDEDILKYVDVGATYYFNKNMSTYVDYKINLLDDNQFTRAAGINTDDIVALGLVYQF
9	MUSTER	1phoA	0.632	0.888	2.763	threading_9	---------------------AEIYNKDGNKLDVYGKVKAMHYMSDNASKDGDQSYIRFGFKGETQINDQLTGYGRWEAEFAGNKAEDTAQQKTRLAFAGLKYKDLGSFDYGRNLGALYDVEAWTDMFPEFGGDSSAQDNFMTKRASGLATYRNTDFFGVIDGLNLTLQYQGKNENRDVK--------------KQNGDGFGTSLTYDFGDFAISGAYTNSDRTNEQN-LQSRGTGKRAEAWATGLKYDANNIYLATFYSETRKMTPIT-GGFANKTQNFEAVAQYQFDFGLRPSLGYVLSKGKDIE-GIGDEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDN---KLNINNDDIVAVGMTYQF
10	SPARKS	1e54a	0.172	0.839	5.895	threading_10	-----------------------------SSVTLFGIVDTNVAYVNKDAATSGASTSRLGLRGTEDLGGGLKAGFWLEGEIFGDDGNASGFNFKRRSTVSLS-GNFGEVRLGRDLVPTSQKLTSYDLFSATGIGPFGFRNWAAGQGADDNGIRANNYTPNFGGFNAGFGYAFDEKQTIGTAD-------------SVGRYIGGYVAYDNGPLSASLGLAQQKTAVG-------GLATDRDEITLGASYNFGVAKLSGLLQQTKFKRDIGG---DIKTNSYMLGASAPVGGVGEVKLQYALYDQKAIDS------KAHQITLGYVHNLSKRTALYGNLAFLKNKDASTLGLQAKGVYAGVQVGIRHAF

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.915 to 1phoA TM-score=0.988 to native SCOP code=f.4.3.1	TM-score=0.915 to 1phoA TM-score=0.987 to native SCOP code=f.4.3.1	TM-score=0.910 to 1hxuA TM-score=0.918 to native SCOP code=f.4.3.1	TM-score=0.885 to 1phoA TM-score=0.906 to native SCOP code=f.4.3.1	TM-score=0.915 to 1phoA TM-score=0.989 to native SCOP code=f.4.3.1

Experimental Structure

Download 2j1nA

SCOP code=f.4.3.1