Template-based Modeling Results for OMPA_ECOLI

Submitted Primary Sequence

>Length 346
MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFINNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPDNGMLSLGVSYRFGQGEAAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKGIKDVVTQPQA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFINNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPDNGMLSLGVSYRFGQGEAAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKGIKDVVTQPQA
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCEECHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCCCCCCCCCHHHCCCCCCHHHHCCCCEEEEEEECCCEEECCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFINNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPDNGMLSLGVSYRFGQGEAAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKGIKDVVTQPQA
4311000000000000000211333120000020000002221113331213323100000000101310001000010131313221321202010010101000102330000010000002021323221433321100000000100013201010101111311212121121210000000012122231122212222322323222010212000213312023301200220021023132430100010001321232112100220020012101322022310102010321211222033223322123011321101020212322222445
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGFINNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPDNGMLSLGVSYRFGQGEAAPVVAPAPAPAPEVQTKHFTLKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEVKGIKDVVTQPQA
1	MUSTER	2l26A	0.242	0.694	1.340	threading_1	-----------------------------------------------------------------------------------SALSLSLLSISRSGNTVTLIGDFPAKAALMTALLLAPGVNVID-QIHVDPVVRSLDFSSAEPVFTASVPIPDFGLKVERDTVTLTGTAPSSEHKDAVKRAAMKIVNNIEVTGQAPPGPPASGPCADLQSANAVTGGPIAFGNDGASLIPADYEILNRVADKLKAC--PDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATVGLGSVNPIASNAT---------PEGRAKNRRVEIVVN-----------
2	SPARKS	2lbta	0.321	0.379	3.027	threading_2	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GQAPPGPPASGPCADLQSAINAVTGGPIAFGNDGASLIPAAYEILNRVADKLKAC--PDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATVGLGSVNPIASNATPEGR---------AKNRRVEIVVN-----------
3	SP3	2lbta	0.321	0.379	2.917	threading_3	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GQAPPGPPASGPCADLQSAINAVTGGPIAFGNDGASLIPAAYEILNRVADKLKAC--PDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATVGLGSVNPIASNATPEGR---------AKNRRVEIVVN-----------
4	PROSPECT2	2k0lA	0.795	0.578	2.354	threading_4	A---------RIMKAIFVLNAAPKDNTWYAGGKLGWSQYHDTGFYGNNGPTRNDQLGAGAFGGYQVNPYLGFEMGYDWLGRMAYKGSVDNGAFKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADSKGNYASTGVSRSVSPVFAGGVEWAVTRDIATRLEYQWVNNIGDAGTVGTRPDNGMLSLGVSYRFGQEDAAPVVAPAPAPAPE-----------------------------------------------------------------------------------------------------------------------------------------
5	SPARKS	3td3a	0.244	0.344	2.948	threading_5	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MELTEDLNMELRVFFDTNKSNIKDQYKPEIAKVAEKLSEY--PNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNENVDASRLSTQGFAWDQPIADNKTKEGRAMN---------RRVFATITGSR--------
6	PPA-I	2k0lA	0.815	0.578	2.685	threading_6	---------ARIMKAIFVLNAAPKDNTWYAGGKLGWSQYHDTGFYGNNGPTRNDQLGAGAFGGYQVNPYLGFEMGYDWLGRMAYKGSVDNGAFKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADSKGNYARSEHDTGVSPVFAGGVEWAVTRDIATRLEYQWVNNIGDAGTVGTRPDNGMLSLGVSYRFGQEDAAPVVAPAPAPAPE-----------------------------------------------------------------------------------------------------------------------------------------
7	PROSPECT2	2k1sA	0.293	0.425	2.097	threading_7	MDVQEAKLRDKM--------------------------------------------------------------------------RGTGVSVTRSGDNI-----------------------------------------------------------------------------------------------------------------ILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEY--PKTAVNVIGYTDSTGGHDLNMRLSQQRADSVASALITQGVDASRIRTQGLGPANPIASNSTAEGK---------AQNRRVEITLSPLLEHHHHHH-
8	HHPRED-l	3nb3_A	0.985	0.396	6.451	threading_8	---------------------APKDNTWYTGAKLGWSQ-------------HENKLGAGAFGGYQVNPYVGFEMGYDWLGRMPY-------AYKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADTYSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTN--------------GMLSLGVSYRFG----------------------------------------------------------------------------------------------------------------------------------------------------------
9	PPA-I	1r1mA	0.411	0.373	2.081	threading_9	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PQYVDETISLSAKTLFGFDKDSLRAEAQDNLKVLAQRLSRT--NIQSVRVEGHTDFMGSDKYNQALSERRAYVVANNLVSNGVPVSRISAVGLGESQAQMTQVCEAEVAKLGLIACIEPDRRVDVKIRSIV--------
10	HHPRED-g	3nb3_A	0.985	0.396	6.046	threading_10	---------------------APKDNTWYTGAKLGWSQ-------------HENKLGAGAFGGYQVNPYVGFEMGYDWLGRMPY-------AYKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADTYSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTN--------------GMLSLGVSYRFG----------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.421 to 2aizP SCOP code=d.79.7.1	TM-score=0.417 to 2aizP SCOP code=d.79.7.1	TM-score=0.502 to 2aizP SCOP code=d.79.7.1	TM-score=0.502 to 2aizP SCOP code=d.79.7.1	TM-score=0.469 to 1p4tA SCOP code=f.4.1.1