Template-based Modeling Results for NUPX_ECOLI

Submitted Primary Sequence

>Length 416
MDVMRSVLGMVVLLTIAFLLSVNKKKISLRTVGAALVLQVVIGGIMLWLPPGRWVAEKVAFGVHKVMAYSDAGSAFIFGSLVGPKMDTLFDGAGFIFGFRVLPAIIFVTALVSILYYIGVMGILIRILGGIFQKALNISKIESFVAVTTIFLGQNEIPAIVKPFIDRLNRNELFTAICSGMASIAGSTMIGYAALGVPVEYLLAASLMAIPGGILFARLLSPATESSQVSFNNLSFTETPPKSIIEAAATGAMTGLKIAAGVATVVMAFVAIIALINGIIGGVGGWFGFEHASLESILGYLLAPLAWVMGVDWSDANLAGSLIGQKLAINEFVAYLNFSPYLQTAGTLDAKTVAIISFALCGFANFGSIGVVVGAFSAVAPHRAPEIAQLGLRALAAATLSNLMSATIAGFFIGLA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDVMRSVLGMVVLLTIAFLLSVNKKKISLRTVGAALVLQVVIGGIMLWLPPGRWVAEKVAFGVHKVMAYSDAGSAFIFGSLVGPKMDTLFDGAGFIFGFRVLPAIIFVTALVSILYYIGVMGILIRILGGIFQKALNISKIESFVAVTTIFLGQNEIPAIVKPFIDRLNRNELFTAICSGMASIAGSTMIGYAALGVPVEYLLAASLMAIPGGILFARLLSPATESSQVSFNNLSFTETPPKSIIEAAATGAMTGLKIAAGVATVVMAFVAIIALINGIIGGVGGWFGFEHASLESILGYLLAPLAWVMGVDWSDANLAGSLIGQKLAINEFVAYLNFSPYLQTAGTLDAKTVAIISFALCGFANFGSIGVVVGAFSAVAPHRAPEIAQLGLRALAAATLSNLMSATIAGFFIGLA
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCEEEEHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDVMRSVLGMVVLLTIAFLLSVNKKKISLRTVGAALVLQVVIGGIMLWLPPGRWVAEKVAFGVHKVMAYSDAGSAFIFGSLVGPKMDTLFDGAGFIFGFRVLPAIIFVTALVSILYYIGVMGILIRILGGIFQKALNISKIESFVAVTTIFLGQNEIPAIVKPFIDRLNRNELFTAICSGMASIAGSTMIGYAALGVPVEYLLAASLMAIPGGILFARLLSPATESSQVSFNNLSFTETPPKSIIEAAATGAMTGLKIAAGVATVVMAFVAIIALINGIIGGVGGWFGFEHASLESILGYLLAPLAWVMGVDWSDANLAGSLIGQKLAINEFVAYLNFSPYLQTAGTLDAKTVAIISFALCGFANFGSIGVVVGAFSAVAPHRAPEIAQLGLRALAAATLSNLMSATIAGFFIGLA
43201000000000000000122334020210000000000000000102101100210020022002002100100002111231322131200000040000000000000002101000000200000002013113020000000000111300000220033023210000000000000000010001112212100000000000000002000122322322233222232323100100020122012000000000100000010010000000211213301021000000000000100312101100110011000110010110021132222012201000000000001000000000002100231121001000100000000000000000001214
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDVMRSVLGMVVLLTIAFLLSVNKKKISLRTVGAALVLQVVIGGIMLWLPPGRWVAEKVAFGVHKVMAYSDAGSAFIFGSLVGPKMDTLFDGAGFIFGFRVLPAIIFVTALVSILYYIGVMGILIRILGGIFQKALNISKIESFVAVTTIFLGQNEIPAIVKPFIDRLNRNELFTAICSGMASIAGSTMIGYAALGVPVEYLLAASLMAIPGGILFARLLSPATESSQVSFNNLSFTETPPKSIIEAAATGAMTGLKIAAGVATVVMAFVAIIALINGIIGGVGGWFGFEHASLESILGYLLAPLAWVMGVDWSDANLAGSLIGQKLAINEFVAYLNFSPYLQTAGTLDAKTVAIISFALCGFANFGSIGVVVGAFSAVAPHRAPEIAQLGLRALAAATLSNLMSATIAGFFIGLA
1	PROSPECT2	1jdha	0.090	0.962	1.928	threading_1	IPELTKLLAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV--------------LFYAITTLHNLLLHQEGAKMAVRLAGGLMVALLNKTNVKFLAITTDCLILASGGPQALVNIMRTYTYEKLLWTTSRVLKVVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL--SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNNNYKNKMMVCQVGGIEALVRTVLRAAICALRHLTSRHQEAEMAQNAVLPVVVKLLHPPSHWPLIKATVGLIRNLLVQLLVRAHQDTQFVEGVRMEEIVEGCTGALHILARDVHNRIVIIPLFVQLLYSPIENIQRVAAGVLCEAPLTELLHTYAAAVLFRMS
2	PPA-I	3g61A1	0.110	0.702	1.139	threading_2	-----------------------------------------------------------------------------------------------------VSVLTMFRWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVS--FWCLAAGRQIHKIRQKFFHAIM------------NQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIG---FTRIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNK------PSIDSFSGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFT
3	PROSPECT2	1b3ua	0.092	0.998	1.855	threading_3	LNSIKKLSTIAVLLALAEQLGTFTTLVGGPEYVHCL-LPPLESLATVEETVVRDKASDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACIAQLLPQEDLEALAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQAEVRAAASHKVKEFCENLSADCRENVIMSQILPCVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGFDEKLNSLCMAWLVREAATSNLKKLVEIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITLPTVLRMAGDPVANVRFNVAKSLLQSEVKPILEKLFAQEALTLA
4	PPA-I	3zuxA	0.114	0.736	1.131	threading_4	-----------------------------------------------------NILSKISSFIGKTFSLWAALFAAA--AFFAPDTFKWAGP--------------YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVV-----IIGVIAQFAIMPATAWCLSKLLN-LPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIF----------------------LMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTLPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLP------YDAQKALTIEVGMQNSGLAAALAAAHFAAAPV-------VAVPGALFSVWHNISGSLLATYWAAKA
5	PROSPECT2	1ejlI	0.094	0.916	1.768	threading_5	VEDIVKGINLQATQAARKLLSREKQP-PIDNIIRAGLIPKFVS--FLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPLDAVEQIL-----PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL------------------GATELPIVTPALRAIGNGTDEQTQKVIDAGALAVFPSLQKEATWTMSNITAGRQDQIQQVVNHLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI---------IEPLMNLLSAKDTKIIQVILDAISNIKLGETEKLSIMIEECGGLDKIEALQRASLNLIEKYFS
6	PPA-I	3ripA	0.103	0.976	1.082	threading_6	LDQFQLLFPSVMVVVEQIKSQKIHG---------CQILETVYKHSCGGLPPVRSALEKILAVCHGVMYKQLS-AWMLHGLLLDQHEEFFGSLKQFSLRVEILPSYIPVRVAEKILFVGESVQMNQEDTFAAELHRLKQQPLFSLVDFEQVVDRIRSAEHLWKLMVEESDLLGQLKIIKDFYGELFQAFIDTAQHMLKTPPTAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGASGWAALGLSYKVTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLKSNQTDAIKWRLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLALSNLLAQSFILLKPVFHCLNEILDLCHSFCSLVSQNLLDERGAAQLSILVKGFSRQSSLLFKILSSVRNHQI
7	PROSPECT2	1xm9A	0.099	0.870	1.761	threading_7	IPKAVQYLSAIGAYYIQHTCFQDESAK--QQVYQLGGICKLVDLLNVQQAAAGALRNLVFRSTTNKLETRRQNG---------------------------------IREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLAD---RVIIPFSGWCVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCCMCVLHNLSYRLDAEVPTLEYNALPEEETNPKGSGWLYHSD------AIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLILPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVEVTRLLTSHTGNTSNSEDILSSACY----------TVRNLMASQPQLAKQYFSSSMLNNIINLCRSKAAEAARLLLSDMW
8	PPA-I	3o7pA	0.080	0.873	1.013	threading_8	----------------------------RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQFQAGLIQSAFYFGYFIIPIPAG----ILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGC-----LETAANPFVTVLGPE-------SSGHFRLNLAQTFASFGAIIAVVFGQSLILSNVVLDKMSPEQLSAYKHSLVLSVQTPYMILTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIA-MALCLISAFAG--------GHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIP
9	PROSPECT2	1ee4a	0.107	0.875	1.760	threading_9	LPQMTQQLNQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVWALTNIASGTSAQTKVVVDAVPLFIQLLYTG-----------------------------SVEVKEQAIWALGNVAGDSTDYRDYVLQPILGLFNSNKPSLIRTATWTLSKPQPDWSVVSQAL-----PTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL------------------SHESTLVQTPALRAVGNGNDLQTQVVINAGVLPALRLLKKEACWTISNITAGNTEQIQAVIDALIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCLLEIADNRIIEVTLDALENILKMGEADKEARGLNINEADFIEKAGGMEKIFNCQNDKIYEKAYKIIETYF
10	MUSTER	1kpkA	0.139	0.901	0.807	threading_10	TPLAILFMAAVVGTLVGLAAVAFDKGVAWQNQRMGALVHYPLLLTVA-FLCSAVLAMFGYFLVRKYAPEAGSGIPEIEGALEDQRP---------VRWWRVL-PVKFFGGLGTLG-REGPTVQIGGNIGRMVLDIFRLKGHTLLATGAAAGLAAAAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFNIDVGLWLYLILGIIFGIFGPIFNKWVL---------GMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATA----NFSMGMLVFIFVARVITTLLCFSSGAP-------GGIFAPMLALGTVLGTAFGMVAVELFPQYH---LEAGTFAIAGMAPLTGIILVLEMTDNYQ------ILPMIITGLGATLLAPLYSAILARTLAKQE

Predicted Tertiary Structure


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TM-score=0.525 to 1pw4A SCOP code=f.38.1.1	TM-score=0.607 to 1wa5B SCOP code=a.118.1.1	TM-score=0.462 to 1j30A SCOP code=a.25.1.1	TM-score=0.865 to 1ialA SCOP code=a.118.1.1	TM-score=0.689 to 1b3uA SCOP code=a.118.1.2