Template-based Modeling Results for NUPC_ECOLI

Submitted Primary Sequence

>Length 400
MDRVLHFVLALAVVAILALLVSSDRKKIRIRYVIQLLVIEVLLAWFFLNSDVGLGFVKGFSEMFEKLLGFANEGTNFVFGSMNDQGLAFFFLKVLCPIVFISALIGILQHIRVLPVIIRAIGFLLSKVNGMGKLESFNAVSSLILGQSENFIAYKDILGKISRNRMYTMAATAMSTVSMSIVGAYMTMLEPKYVVAALVLNMFSTFIVLSLINPYRVDASEENIQMSNLHEGQSFFEMLGEYILAGFKVAIIVAAMLIGFIALIAALNALFATVTGWFGYSISFQGILGYIFYPIAWVMGVPSSEALQVGSIMATKLVSNEFVAMMDLQKIASTLSPRAEGIISVFLVSFANFSSIGIIAGAVKGLNEEQGNVVSRFGLKLVYGSTLVSVLSASIAALVL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDRVLHFVLALAVVAILALLVSSDRKKIRIRYVIQLLVIEVLLAWFFLNSDVGLGFVKGFSEMFEKLLGFANEGTNFVFGSMNDQGLAFFFLKVLCPIVFISALIGILQHIRVLPVIIRAIGFLLSKVNGMGKLESFNAVSSLILGQSENFIAYKDILGKISRNRMYTMAATAMSTVSMSIVGAYMTMLEPKYVVAALVLNMFSTFIVLSLINPYRVDASEENIQMSNLHEGQSFFEMLGEYILAGFKVAIIVAAMLIGFIALIAALNALFATVTGWFGYSISFQGILGYIFYPIAWVMGVPSSEALQVGSIMATKLVSNEFVAMMDLQKIASTLSPRAEGIISVFLVSFANFSSIGIIAGAVKGLNEEQGNVVSRFGLKLVYGSTLVSVLSASIAALVL
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDRVLHFVLALAVVAILALLVSSDRKKIRIRYVIQLLVIEVLLAWFFLNSDVGLGFVKGFSEMFEKLLGFANEGTNFVFGSMNDQGLAFFFLKVLCPIVFISALIGILQHIRVLPVIIRAIGFLLSKVNGMGKLESFNAVSSLILGQSENFIAYKDILGKISRNRMYTMAATAMSTVSMSIVGAYMTMLEPKYVVAALVLNMFSTFIVLSLINPYRVDASEENIQMSNLHEGQSFFEMLGEYILAGFKVAIIVAAMLIGFIALIAALNALFATVTGWFGYSISFQGILGYIFYPIAWVMGVPSSEALQVGSIMATKLVSNEFVAMMDLQKIASTLSPRAEGIISVFLVSFANFSSIGIIAGAVKGLNEEQGNVVSRFGLKLVYGSTLVSVLSASIAALVL
4230011000000000000001213340402000000000000000000030010002000200220000022002000121123210000020001000000000001004001000200010002012113120000000000121300000231023023220000000000000000000001112130000000000000000120011242323333232232432310110002001200200110001000000001000100210111112201010000000000000000212001200100001000110000110131122012101000000001001000000000003100331031002000100000000000000002112
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDRVLHFVLALAVVAILALLVSSDRKKIRIRYVIQLLVIEVLLAWFFLNSDVGLGFVKGFSEMFEKLLGFANEGTNFVFGSMNDQGLAFFFLKVLCPIVFISALIGILQHIRVLPVIIRAIGFLLSKVNGMGKLESFNAVSSLILGQSENFIAYKDILGKISRNRMYTMAATAMSTVSMSIVGAYMTMLEPKYVVAALVLNMFSTFIVLSLINPYRVDASEENIQMSNLHEGQSFFEMLGEYILAGFKVAIIVAAMLIGFIALIAALNALFATVTGWFGYSISFQGILGYIFYPIAWVMGVPSSEALQVGSIMATKLVSNEFVAMMDLQKIASTLSPRAEGIISVFLVSFANFSSIGIIAGAVKGLNEEQGNVVSRFGLKLVYGSTLVSVLSASIAALVL
1	SPARKS	2xwub	0.111	0.948	1.091	threading_1	VDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLSCVRQKVLKCFSSWVQLLQDCEALIFAALQDSELFDSSVEAIVNAI---SQPDAQRYVNTLLKLIPLVQEQLRQAVQNGDMETSHGICRIAVALGEN--HSRALLDQVEHWQSFLALVNMIMFCSSLTLTFWYTLQAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKE--QFRIYRVDISDTLMYVYEMLGA--------ELLSNLYDKLGRLL-TSYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLVQLADTVMFTIGLSEWLADHPVMINSVLPLVLHALGNPELSVSSVSTLKKICRECKYDLPPY-----AANIVAVSQDVLMKQIHK
2	PROSPECT2	1jdha	0.074	0.985	1.885	threading_2	IPELTKLLVVNKAAVMVHQLSKKEAS--RHAIMRSPQMVSAIVRTMQNTNRCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLAKMAVRLAGGLQKMVALLNKTNVKFL----AITTDCLQILAYGNQESKLIILNIMRTYTYEKLLWTTSRVLKVLSVCNKPAIVEAGGMQALGLHQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLGSDDINVVTCAAGILSNLTGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHLPVVVPSHWPLIKATVGLIRNPANHAPLREQGAIPRLVQLLVRAHQDTQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGENIQRVAAGVLCELYAAAVLFRMS
3	PPA-I	3g61A1	0.113	0.730	1.208	threading_3	----------------------------------------------------------------------------------------------VSVLTMFRWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVS-FWCLAAGRQIHKIRQKFFHAIM-----------NQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIG--FTRIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIILLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITF
4	PROSPECT2	1ejlI	0.109	0.920	1.861	threading_4	VEDIVKGISQLQATQAARKLLSREKQP-PIDNIIRAGLIPKFVSFLPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPLDAVEQIL-----PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE--------------------LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK------TNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGQKEAAWAITNYTSGGTVEQIVYLVMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEESVYKASLNLIEKYFS
5	PPA-I	3g61A4	0.086	0.725	1.154	threading_5	---------------------------------------------------------------------------------------------------------LTLVILAISPVLGLSAGIWAKILSSFTDLHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVIS-----KEYSLDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIILQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAKGATGSRLAVIFQNIANLGTGIIISLIYNVLLVFSAIVFGAMAVGQVS
6	PROSPECT2	1b3ua	0.093	0.995	1.831	threading_6	AERTRSELLPFLVLLALAEQLGTFTTLVGGPEYVHCL-LPPLESLAISHEHSPSDLEAHFVPLVKRLAFTSRTSACGLFSVCYPRVSSAVKAELRQYFRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSAVEACVNIAQLLPQEDLTLRQAAED-KSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMEVRAAASHKVKEFCENLSADCRENVIMSQVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAWRVRLAIIEYMPLGQLGVEFFLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVL
7	PPA-I	3zuxA	0.113	0.755	1.154	threading_7	------------------------------------------------------NILSKISSFIGKTFSLWAALAAFFAPDTFKWAGP-----------YIPWLLGIIMFGMGLTLKPSDFDILFKH-----PKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIF---------------------LMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAAPV-------VAVPGALFSVWHNISGSLLATYWA
8	PROSPECT2	1ee4a	0.085	0.912	1.811	threading_8	LPQMTQQLEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVAWALTNIASGTSAQTKVVVDAVPLFIQLLYTG---------------------SVEVKEQAIWALGNVAGDSTDYRDYVLQPILGLFNSNKPSLIRTATWTLSKPQPDWSVVSQAL-----PTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL------IPPLVKLLEVAEDKTK---KEACWAISNASSGGLQRPDIIRYLVIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNNENADFIEKAGGMEKIFNCQIYEKAYKIIETYF
9	PPA-I	3o7pA	0.077	0.877	1.113	threading_9	FQQAFFQAGLIQSAFYFGYFI-----------------IPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMN----------------------YTLFLVGLFIIAAGLGCLETAANPFVTVLGESSGHFRLNLAQTFASFGAAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT-------KFPALQSDNHSDAKQGSFSASLSRLARI--RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAA-YALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAG
10	PROSPECT2	1gw5b	0.104	0.985	1.757	threading_10	VSSLFPDVVNKLVYLYLMNYAKSQPDMAAVNSFVKDCLIRALAVRTMGCIKITEYLCEPLRKCLPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLSNPMVVANAVAALSEINLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVANSAVVLSAVKVLMKLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQ---KRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYVDVDFVRKAVRAIGRCAI---KVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKESIIATLCENLDSLDEPDARAAMIWIVGEYARIDNADELLESFLEGFHDESTQVQLTLLTAIVKELVQQVLSIEPTLLFV

Predicted Tertiary Structure


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TM-score=0.593 to 1pw4A SCOP code=f.38.1.1	TM-score=0.584 to 1m8xA SCOP code=a.118.1.8	TM-score=0.655 to 1wa5B SCOP code=a.118.1.1	TM-score=0.465 to 1j30A SCOP code=a.25.1.1	TM-score=0.428 to 1dowA SCOP code=a.24.9.1