Template-based Modeling Results for NUDK_ECOLI

Submitted Primary Sequence

>Length 191
MTQQITLIKDKILSDNYFTLHNITYDLTRKDGEVIRHKREVYDRGNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEPEVCIRKEAIEETGYEVGEVRKLFELYMSPGGVTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRDGKTVLLLNYLQTSHLMD
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTQQITLIKDKILSDNYFTLHNITYDLTRKDGEVIRHKREVYDRGNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEPEVCIRKEAIEETGYEVGEVRKLFELYMSPGGVTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRDGKTVLLLNYLQTSHLMD
CCCCEEEEEEEEEECCCEEEEEEEEEEECCCCCEEEEEEEEEEECCEEEEEEEECCCCEEEEEEEEEEEEEECCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTQQITLIKDKILSDNYFTLHNITYDLTRKDGEVIRHKREVYDRGNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEPEVCIRKEAIEETGYEVGEVRKLFELYMSPGGVTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRDGKTVLLLNYLQTSHLMD
55422202212002331020210101021441311312110021020000000114431000021010001122332110020111123332122001120032122311202200100102101210000000211333323222223322010010102201300331303101000000001023124
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTQQITLIKDKILSDNYFTLHNITYDLTRKDGEVIRHKREVYDRGNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEPEVCIRKEAIEETGYEVGEVRKLFELYMSPGGVTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRDGKTVLLLNYLQTSHLMD
1	MUSTER	1viuB	0.978	0.932	3.823	threading_1	--QQITLIKDKILSDNYFTLHNITYDLTRKDGEVIRHKREVYDRGNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEPEVCIRKEAIEETGYEVGEVRKLFELY-SPGGVTELIHFFIAEYSDN--------QRAEDIEVLELPFSQALEI-KTGEIRDGKTVLLLNYLQTSHL-D
2	SPARKS	1viua	0.960	0.927	4.474	threading_2	--QQITLIKDKILSDNYFTLHNITYDLTRKDGEVIRHKREVYDRGNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEPEVCIRKEAIEETGYEVGEVRKLFELY-SPGGVTELIHFFIAEY---------SDNQREDIEVLELPFSQAL-EIKTGEIRDGKTVLLLNYLQTSHLD-
3	PROSPECT2	2yvmA	0.258	0.932	3.334	threading_3	MSPW-ERILLEEILSEPVRLVKE--RVRTHTGR--ELTYVYRPGPVAASFVLPVTERGTALLVRQYRHPT------GKFLLEVPAGKVDGETPEAAARRELREEVGAEAETLIPLPSFHPQPSFTAVVFHPFLALKAR--VVTPPTLEEGELLESLELPLTEVYALLAKGEIQDASTALTLFYAEPHLGLL
4	PPA-I	1viuB	0.972	0.932	4.653	threading_4	--QQITLIKDKILSDNYFTLHNITYDLTRKDGEVIRHKREVYDRGNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEPEVCIRKEAIEETGYEVGEVRKLFELY-SPGGVTELIHFFIAEYSDN--------QRAEDIEVLELPFSQALEI-KTGEIRDGKTVLLLNYLQTSHLD-
5	HHPRED-l	1g0s_A	0.275	0.953	4.431	threading_5	GKNDVEIIARETLYRGFFSLDLYRFRHRLFNGQMSEVRREIFERGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSE-TPWLLEMVAGMIEEESVEDVARREAIEEAGLIVKRTKPVLSFLASPGGTSERSSIMVGEVDATTAS-------NEDIRVHVVSREQAYQWVEEGKIDNAASVIALQWLQLHHQA-
6	HHPRED-g	1g0s_A	0.273	0.958	4.954	threading_6	GKNDVEIIARETLYRGFFSLDLYRFRHRLFNGQMSEVRREIFERGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSE-TPWLLEMVAGMIEGESVEDVARREAIEEAGLIVKRTKPVLSFLASPGGTSERSSIMVGEVDATTAS-------NEDIRVHVVSREQAYQWVEEGKIDNAASVIALQWLQLHHQAL
7	SP3	1viua	0.966	0.927	4.505	threading_7	--QQITLIKDKILSDNYFTLHNITYDLTRKDGEVIRHKREVYDRGNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEPEVCIRKEAIEETGYEVGEVRKLFELY-SPGGVTELIHFFIAEY---------SDNQREDIEVLELPFSQAL-EIKTGEIRDGKTVLLLNYLQTSHL-D
8	SAM-T99	1viqA	0.273	0.979	4.460	threading_8	GKNDVEIIARETLYRGFSSLDLYRFRHRLFNGQMHEVRREIFERGHAAVLLPFDPVRDEVVLIEQIRIAAYD-TSETPWLLEMVAGMIEEGEVEDVARREAIEEAGLIVKRTKPVLSFLASPGGTSERSSIMVGEVDATTASGI---HGNEDIRVHVVSREQAYQWVEEGKIDNAASVIALQWLQLHHQAL
9	MUSTER	1viqA	0.274	0.974	3.408	threading_9	GKNDVEIIARETLYRGFSSLDLYRFRHRLFNGQMSEVRREIFERGHAAVLLPFDPVRDEVVLIEQIRIAAYDTS-ETPWLLEMVAGMIEGESVEDVARREAIEEAGLIVKRTKPVLSFLASPGGTSERSSIMVGEVDATTAS---GIHGNEDIRVHVVSREQAYQWVEEGKIDNAASVIALQWLQLHH-QA
10	SPARKS	1g0sa	0.284	0.958	4.361	threading_10	GKNDVEIIARETLYRGFFSLDLYRFRHRLFNGQMSEVRREIFERGHAAVLLPFDPVRDEVVLIEQIRIAAY-DTSETPWLLEMVAGMIEGESVEDVARREAIEEAGLIVKRTKPVLSFLASPGGTSERSSIMVGEVDATT-------ASNEDIRVHVVSREQAYQWVEEGKIDNAASVIALQWLQLHHLKN

Predicted Tertiary Structure


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TM-score=0.877 to 1viuB TM-score=0.878 to native SCOP code=d.113.1.1	TM-score=0.885 to 1viuB TM-score=0.884 to native SCOP code=d.113.1.1	TM-score=0.819 to 1viuB TM-score=0.819 to native SCOP code=d.113.1.1	TM-score=0.770 to 1viuB TM-score=0.790 to native SCOP code=d.113.1.1	TM-score=0.889 to 1viuB TM-score=0.885 to native SCOP code=d.113.1.1

Experimental Structure

Download 3o61D

SCOP code=d.113.1.1