Template-based Modeling Results for NUDD_ECOLI

Submitted Primary Sequence

>Length 159
MFLRQEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVHANSRAYFLAEKRTGVPGL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MFLRQEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVHANSRAYFLAEKRTGVPGL
CCCCHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCHHHHEEEEECHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MFLRQEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVHANSRAYFLAEKRTGVPGL
541233201201331000000000223411000011234113010100103024322022001210132121201122010000010013322212322100000001020243322223330110100102001213301210210011134222333
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MFLRQEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVHANSRAYFLAEKRTGVPGL
1	MUSTER	1ryaA	1.000	1.000	3.954	threading_1	MFLRQEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVHANSRAYFLAEKRTGVPGL
2	SPARKS	1ryaa	1.000	1.000	3.753	threading_2	MFLRQEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVHANSRAYFLAEKRTGVPGL
3	PROSPECT2	1ryaA	1.000	1.000	3.093	threading_3	MFLRQEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVHANSRAYFLAEKRTGVPGL
4	PPA-I	1ryaA	1.000	1.000	4.601	threading_4	MFLRQEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVHANSRAYFLAEKRTGVPGL
5	HHPRED-l	1rya_A	1.000	0.994	3.345	threading_5	MFLRQEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVHANSRAYFLAEKRTGVPG-
6	HHPRED-g	1rya_A	1.000	1.000	2.579	threading_6	MFLRQEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVHANSRAYFLAEKRTGVPGL
7	SP3	1ryaa	1.000	1.000	3.586	threading_7	MFLRQEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVHANSRAYFLAEKRTGVPGL
8	SAM-T99	1ryaA	1.000	1.000	3.008	threading_8	MFLRQEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVHANSRAYFLAEKRTGVPGL
9	MUSTER	3grnA	0.244	0.849	2.641	threading_9	L-----------EKPYIISVYALIRNEKGEFLLLRRSSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITM--VPGDIAGQVNFELTE--------KKVIAIVFDGGYVVADVKL-SYEHIEYSWVSLEKILGMETLPAYFRDFFERFDRENKK--
10	SPARKS	3grna	0.246	0.843	2.489	threading_10	----------SLEKPYIISVYALIRNEKGEFLLLRRSSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITM--VPGDIAGQVNFELTE--------KKVIAIVFDGGYVVADVKL-SYEHIEYSWVSLEKILGMETLPAYFRDFFERFDREK----

Predicted Tertiary Structure


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TM-score=0.996 to 1ryaA TM-score=0.999 to native SCOP code=d.113.1.5	TM-score=0.996 to 1ryaA TM-score=0.999 to native SCOP code=d.113.1.5	TM-score=0.996 to 1ryaA TM-score=0.999 to native SCOP code=d.113.1.5	TM-score=0.996 to 1ryaA TM-score=0.999 to native SCOP code=d.113.1.5	TM-score=0.996 to 1ryaA TM-score=0.999 to native SCOP code=d.113.1.5

Experimental Structure

Download 1ryaA

SCOP code=d.113.1.5