Template-based Modeling Results for NUDC_ECOLI

Submitted Primary Sequence

>Length 257
MDRIIEKLDHGWWVVSHEQKLWLPKGELPYGEAANFDLVGQRALQIGEWQGEPVWLVQQQRRHDMGSVRQVIDLDVGLFQLAGRGVQLAEFYRSHKYCGYCGHEMYPSKTEWAMLCSHCRERYYPQIAPCIIVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGDIVIDPKELLEANWYRYDDLPLLPPPGTVARRLIEDTVAMCRAEYE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDRIIEKLDHGWWVVSHEQKLWLPKGELPYGEAANFDLVGQRALQIGEWQGEPVWLVQQQRRHDMGSVRQVIDLDVGLFQLAGRGVQLAEFYRSHKYCGYCGHEMYPSKTEWAMLCSHCRERYYPQIAPCIIVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGDIVIDPKELLEANWYRYDDLPLLPPPGTVARRLIEDTVAMCRAEYE
CCHHHCCCCCEEEEEEECCEEEECCCCCCCCCHHHCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCCEECCCCCCCCCCCHHHHHCEEHHCCCCEEEEEEEEEEEECCCCCCEEEEEEEEEECCCCCCCCHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDRIIEKLDHGWWVVSHEQKLWLPKGELPYGEAANFDLVGQRALQIGEWQGEPVWLVQQQRRHDMGSVRQVIDLDVGLFQLAGRGVQLAEFYRSHKYCGYCGHEMYPSKTEWAMLCSHCRERYYPQIAPCIIVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGDIVIDPKELLEANWYRYDDLPLLPPPGTVARRLIEDTVAMCRAEYE
43421242320000001221000241301213222021212100000213111010022344331120120120221002000100200101210300020123022143310010220222212310000000012331000011322431100001110122321320121122332102021010000111212100000000102323121213102302103131022012302001200220022033334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDRIIEKLDHGWWVVSHEQKLWLPKGELPYGEAANFDLVGQRALQIGEWQGEPVWLVQQQRRHDMGSVRQVIDLDVGLFQLAGRGVQLAEFYRSHKYCGYCGHEMYPSKTEWAMLCSHCRERYYPQIAPCIIVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGDIVIDPKELLEANWYRYDDLPLLPPPGTVARRLIEDTVAMCRAEYE
1	MUSTER	2gb5A	0.928	0.973	3.566	threading_1	HDRIIEKLDHGWWVVSHEQKLWLPKGELPYGEAANFDLVGQRALQIGEWQGEPVWLVQQQRRHDG-SVRQVIDLDVGLFQLAGRGVQLAEFYRSHKYCGYCGHEY--PSKTEWALCSHCRERYYPQIAPCIIVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREV-EESGIKVKNLRYVTSQPWPFPQSLTAFAEYDS--GDIVIDPKELLEANWYRYDDLPLLPPPGTVARRLIEDTVA-CRAEYE
2	SPARKS	1vk6a	0.916	0.969	5.544	threading_2	HDRIIEKLDHGWWVVSHEQKLWLPKGELPYGEAANFDLVGQRALQIGEWQGEPVWLVQQQRRHDG-SVRQVIDLDVGLFQLAGRGVQLAEFYRSHKYCGYCGHEYPSKTEW--ALCSHCRERYYPQIAPCIIVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREV-EESGIKVKNLRYVTSQPWPFPQSLTAFAEY--DSGDIVIDPKELLEANWYRYDDLPLLPPPGTVARRLIEDTVACRAEY--
3	PROSPECT2	1vk6A	0.928	0.969	4.130	threading_3	HDRIIEKLDHGWWVVSHEQKLWLPKGELPYGEAANFDLVGQRALQIGEWQGEPVWLVQQQRRHDG-SVRQVIDLDVGLFQLAGRGVQLAEFYRSHKYCGYCGHEY--PSKTEWALCSHCRERYYPQIAPCIIVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREV-EESGIKVKNLRYVTSQPWPFPQSLT--AFAEYDSGDIVIDPKELLEANWYRYDDLPLLPPPGTVARRLIEDTVA--CRAEY
4	PPA-I	2gb5A	0.904	0.973	5.244	threading_4	HDRIIEKLDHGWWVVSHEQKLWLPKGELPYGEAANFDLVGQRALQIGEWQGEPVWLVQQQRRHDG-SVRQVIDLDVGLFQLAGRGVQLAEFYRSHKYCGYCGHEY--PSKTEWALCSHCRERYYPQIAPCIIVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREV-EESGIKVKNLRYVTSQPWPFPQSLTAFAEYDS--GDIVIDPKELLEANWYRYDDLPLLPPPGTVARRLIEDTVACRAEYE-
5	HHPRED-l	1vk6_A	1.000	0.965	5.962	threading_5	-DRIIEKLDHGWWVVSHEQKLWLPKGELPYGEAANFDLVGQRALQIGEWQGEPVWLVQQQRRHD-GSVRQVIDLDVGLFQLAGRGVQLAEFYRSHKYCGYCGHE-YPSKTEWA-LCSHCRERYYPQIAPCIIVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREV-EESGIKVKNLRYVTSQPWPFPQSL-TAF-AEYDSGDIVIDPKELLEANWYRYDDLPLLPPPGTVARRLIEDTVA-CRAEY-
6	HHPRED-g	1vk6_A	1.000	0.965	6.184	threading_6	-DRIIEKLDHGWWVVSHEQKLWLPKGELPYGEAANFDLVGQRALQIGEWQGEPVWLVQQQRRHD-GSVRQVIDLDVGLFQLAGRGVQLAEFYRSHKYCGYCGHE-YPSKTEWA-LCSHCRERYYPQIAPCIIVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREV-EESGIKVKNLRYVTSQPWPFPQSL-TAF-AEYDSGDIVIDPKELLEANWYRYDDLPLLPPPGTVARRLIEDTVA-CRAEY-
7	SP3	1vk6a	0.928	0.969	5.296	threading_7	HDRIIEKLDHGWWVVSHEQKLWLPKGELPYGEAANFDLVGQRALQIGEWQGEPVWLVQQQRRHDG-SVRQVIDLDVGLFQLAGRGVQLAEFYRSHKYCGYCGHEYP--SKTEWALCSHCRERYYPQIAPCIIVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREV-EESGIKVKNLRYVTSQPWPFPQSLTAFAEY--DSGDIVIDPKELLEANWYRYDDLPLLPPPGTVARRLIEDTVACR-AEY-
8	SAM-T99	2gb5A	0.939	0.949	6.481	threading_8	HDRIIEKLDHGWWVVSHEQKLWLPKGELPYGEAANFDLVGQRALQIGEWQGEPVWLVQQQ-RRHDGSVRQVIDLDVGLFQLAGRGVQLAEFYRSHKYCGYCGHEYPSKTE--WALCSHCRERYYPQIAPCIIVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREV-EESGIKVKNLRYVTSQPWPFPQSLTA--FAEYDSGDIVIDPKELLEANWYRYDDLPLLPPPGTVARRLIEDTVA-------
9	MUSTER	3cngC	0.252	0.603	1.777	threading_9	-----------------------------------------------------------------------------------------------KFCSQCGGEVILRDTLPRYICPKCHTIHYQNPKVIVGCIPEWENKVLLCKRAIAPRGKWTLPAGF-ENNETLVQGAARETLEEANARVEIRELYAVYSLPHIS-QVYLFRAKLLDLDFFPG-IESLEVRLFGEQEIPWND----IAFRVIHDPLKRYEERHH
10	SPARKS	3cnga	0.226	0.619	2.996	threading_10	-----------------------------------------------------------------------------------------------KFCSQCGGEVILRDTLPRYICPKCHTIHYQNPKVIVGCIPEWENKVLLCKRAIAPRGKWTLPAGF-ENNETLVQGAARETLEEANARVEIRELYAVYSLPHIS-QVYLFRAKLLDLDFFPG-IESLEVRLFGEQEIPWNDIAFRVIHDPLKRYEERHHGQPA

Predicted Tertiary Structure


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TM-score=0.597 to 1vc9A TM-score=0.983 to native SCOP code=d.113.1.1	TM-score=0.601 to 1vc9A TM-score=0.989 to native SCOP code=d.113.1.1	TM-score=0.595 to 1vc9A TM-score=0.855 to native SCOP code=d.113.1.1	TM-score=0.605 to 1vc9A TM-score=0.864 to native SCOP code=d.113.1.1	TM-score=0.597 to 1vc9A TM-score=0.981 to native SCOP code=d.113.1.1

Experimental Structure

Download 2gb5A

SCOP code=d.113.1.1