Template-based Modeling Results for NRFD_ECOLI

Submitted Primary Sequence

>Length 318
MTQTSAFHFESLVWDWPIAIYLFLIGISAGLVTLAVLLRRFYPQAGGADSTLLRTTLIVGPGAVILGLLILVFHLTRPWTFWKLMFHYSFTSVMSMGVMLFQLYMVVLVLWLAKIFEHDLLALQQRWLPKLGIVQKVLSLLTPVHRGLETLMLVLAVLLGAYTGFLLSALKSYPFLNNPILPVLFLFSGISSGAAVALIAMAIRQRSNPHSTEAQFVHRMEIPVVWGEIFLLVAFFVGLALGDDGKVRALVAALGGGFWTWWFWLGVAGLGLIVPMLLKPWVNRSSGIPAVLAACGASLVGVLMLRFFILYAGQLTVA
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTQTSAFHFESLVWDWPIAIYLFLIGISAGLVTLAVLLRRFYPQAGGADSTLLRTTLIVGPGAVILGLLILVFHLTRPWTFWKLMFHYSFTSVMSMGVMLFQLYMVVLVLWLAKIFEHDLLALQQRWLPKLGIVQKVLSLLTPVHRGLETLMLVLAVLLGAYTGFLLSALKSYPFLNNPILPVLFLFSGISSGAAVALIAMAIRQRSNPHSTEAQFVHRMEIPVVWGEIFLLVAFFVGLALGDDGKVRALVAALGGGFWTWWFWLGVAGLGLIVPMLLKPWVNRSSGIPAVLAACGASLVGVLMLRFFILYAGQLTVA
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEC
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTQTSAFHFESLVWDWPIAIYLFLIGISAGLVTLAVLLRRFYPQAGGADSTLLRTTLIVGPGAVILGLLILVFHLTRPWTFWKLMFHYSFTSVMSMGVMLFQLYMVVLVLWLAKIFEHDLLALQQRWLPKLGIVQKVLSLLTPVHRGLETLMLVLAVLLGAYTGFLLSALKSYPFLNNPILPVLFLFSGISSGAAVALIAMAIRQRSNPHSTEAQFVHRMEIPVVWGEIFLLVAFFVGLALGDDGKVRALVAALGGGFWTWWFWLGVAGLGLIVPMLLKPWVNRSSGIPAVLAACGASLVGVLMLRFFILYAGQLTVA
553212211310112110011001101000110000002211342212311101000000000000000000020220010010001111210100000000000001111003101310120033211300001300110120130021000000000000000000003212112110000000010000000000000002132333222020012011000001000000000000113311120111122101101111100002111121123221322121100000000100000000000011011123
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTQTSAFHFESLVWDWPIAIYLFLIGISAGLVTLAVLLRRFYPQAGGADSTLLRTTLIVGPGAVILGLLILVFHLTRPWTFWKLMFHYSFTSVMSMGVMLFQLYMVVLVLWLAKIFEHDLLALQQRWLPKLGIVQKVLSLLTPVHRGLETLMLVLAVLLGAYTGFLLSALKSYPFLNNPILPVLFLFSGISSGAAVALIAMAIRQRSNPHSTEAQFVHRMEIPVVWGEIFLLVAFFVGLALGDDGKVRALVAALGGGFWTWWFWLGVAGLGLIVPMLLKPWVNRSSGIPAVLAACGASLVGVLMLRFFILYAGQLTVA
1	MUSTER	2vpyC	0.264	0.752	1.122	threading_1	LPNAQEF------WHWTNALHFVLVGLAGGVALLAALLHLKGDA-------EARRYTLYALMLIALDLFILWAE--SPARFW-LFLSFHPTSPIWWGAWGLGLGFLTGGLLYL----------------------------KGSQRALAWALLVFSLVALSYPGLALAVNLNRPLWNG-------LMAGLFPLTALVLALGLAALLKSPWA-------LFPLRVLAGASLLLALLYP-LTLPPEARGHLLEEA---GFWYGLFLLLGLGT---------FWQER--------LAPWAGLLAAAGLRALLVLAGQWQGL
2	SPARKS	2vpwc	0.201	0.767	1.205	threading_2	---AEFYGLPNAFWHWTNALHFVLVGLAGGVALLAALLHL----KGDAE-----ARRYTLYALMLIALDLFILWAESPFTHIWLFLSFHPTSPIWWGAWGLGLGFL------------TGGLLYLGKGSQRALAWALLVFSLVALS---------------YPGLALAVNLNRPLWNG-------LMAGLFPLTALVLALGLAALLKSPWALF-------PLRVLAGASLLLALLYPLTL----PPEARGHLLEEAGFWYGLFLLLGLGTFW-----------QERLAPWAGLLAAAGLRALLVLA------GQWQGL
3	PROSPECT2	1ejlI	0.099	0.981	1.530	threading_3	LSREKQPPIDNIIRAGLIPVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLPEVLADSCWAISYLTDGPNERIEMVV------KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPNIQKEATWTMSNITAGRQDQIQQVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSQVILDAISNIFQAAEKLGES
4	PPA-I	2vpyC	0.242	0.780	2.048	threading_4	-AEFYGLPNAQEFWHWTNALHFVLVGLAGGVALLAALLHLKG-------DAEARRYTLYALMLIALDLFILWAESPARFRFTHLFLSFHPTSPIWWGAWGLGLGFLTGGLLYLG---------------------------KGSQRALAWALLVFSLVALSYPGLALAVNLNRPLWNG-------LMAGLFPLTALVLALGLAALLKSPWA--------LFPLRVLAGASLLLALLYPLTLPPEARGHLLEEA---GFWYGLFLLLGLGT---------FWQER--------LAPWAGLLAAAGLRALLVLAGQWQGL
5	HHPRED-l	2vpz_C	0.233	0.770	5.755	threading_5	-AEFYGLPNAQEFWHWTNALHFVLVGLAGGVALLAALLHLKGDAE--AR-RYT----LYALMLIALDLFILWA--ESPARFTHIWLSFHPTSPIWWGAWGLGLGFLTGGLLYLG---------------------------KGSQRALAWALLVFSLVALSYPGLALAVNLNRPLWNGL-MAGLFPLTALVLALGLAALL-----KSPWALFPL--------RVLAGASLLLALLY-PLTLPP---EARGHLLEEAGFWYGLFLL--LGLG-------TFW-QERL----APWAGLLAAAG---LRALLVLAGQWQG-
6	HHPRED-g	2vpz_C	0.225	0.767	7.262	threading_6	---AEFYGLPQEFWHWTNALHFVLVGLAGGVALLAALLHLKGDAE---ARRYT----LYALMLIALDLFILWA--ESPARFTHIWLSFHPTSPIWWGAWGLGLGFLTGGLLYLG---------------------------KGSQRALAWALLVFSLVALSYPGLALAVNLNRPLWNGL-MAGLFPLTALVLALGLAALLK-----SP----WALF----PLRVLAGASLLLAL----LYPLTLPPEARGHLLEEAGFWYGLFLL--LGL--------GTFWQER----LAPWAGLLAAAG---LRALLVLAGQWQGL
7	SP3	2vpwc	0.261	0.770	0.464	threading_7	----AEFYLPNAFWHWTNALHFVLVGLAGGVALLAALLHL----KGDAE---ARRYTLYALMLIALDLFILWAESPARFRFTHIWLFLSFTSPIWWGAWGLGLGFLTGGLLY---------------LGK------------GSQRALAWALLVFSLVALSYPGLALAVNLNRPLWNG-------LMAGLFPLTALVLALGLAALLKSPWAL-------FPLRVLAGASLLLALLY-PLTLP---PEARGHLLEEAGFWYGLFLLLGLGTF---------WQER--------LAPWAGLLAAAGLRALLVLAGQWQGL
8	SAM-T99	2vpyC	0.197	0.767	1.797	threading_8	-AEFYGLPNAQEFWHWTNALHFVLVGLAGGVALLAALLHLKGDAE-------ARRYTLYALMLIALDLFILWAESPARFRFIWLFLSFHPTSPIWWGAWGLGLGFLTGGLLYLGKGSQRA---------------------------LAWALLVFSLVALSYPGLALAVNLNRPLWN-GLMAGLFPLTALVLALGLAALLK---------------SPWALFPLRVLAGASLLLALLYPLTLPPEARGHLLEEA----GFWYGLFLLLGLG---------------TFWQERLAPWAGLLAAAGLRALLVLAGQ----
9	MUSTER	3zuxA	0.144	0.874	0.836	threading_9	LFAAAAFFAPTFKWAGPIPWLLGIIMFGMGLTLFDILFKHPKV-------VIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLA---GNVALSVAVTSVSTLTSPLL-----PAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKV--LGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGK------MESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQ-----------SGLAAALAAAHFAAAPVVAPGALFSVWHNISGSLLATYWAAKA------
10	SPARKS	1fcha	0.142	0.796	0.829	threading_10	YDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMSALRRCLELKPQTALMALAVSFTNESLQCEILRDWLRYTPAYAHLVTRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDQCGLGVLFNLSGEYDKAVDCFTAALSV---------------RP--ND--------------YLLWNKLGATLANGNQSEEAVAAYRRALELP----GYIRSRYNLGISCINLGAHREAVEHFLEALNMQR-------------------------KSGGAMSENIWSTLRLALSML-----GQSDAY

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.489 to 1orjA SCOP code=a.24.19.1	TM-score=0.422 to 1sziA SCOP code=a.24.23.1	TM-score=0.481 to 1hrbA SCOP code=a.24.4.1	TM-score=0.790 to 1ialA SCOP code=a.118.1.1	TM-score=0.494 to 2mhrA SCOP code=a.24.4.1