Template-based Modeling Results for NPD_ECOLI

Submitted Primary Sequence

>Length 242
MEKPRVLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQVLDWTGDVTPEDKCHCCQFPAPLRPHVVWFGEMPLGMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKLLKGLKAGSIA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MEKPRVLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQVLDWTGDVTPEDKCHCCQFPAPLRPHVVWFGEMPLGMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKLLKGLKAGSIA
CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCHHHHCCCCEEEEEECCCCEEEECCCCCCCCCHHHHCCCCCCCCCCCCCEECCCEEECCCCCHHHHHHHHHHHHCCEEEEECCCCEEEEHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MEKPRVLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQVLDWTGDVTPEDKCHCCQFPAPLRPHVVWFGEMPLGMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKLLKGLKAGSIA
55212000000000013110210302300133131220010200231031012001001310123312011000000101332221000001102201230122100100020120100311320312121223320300302000212000113102102201100230000000000020000000021033321200000123131133000101020220022002201311322224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MEKPRVLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQVLDWTGDVTPEDKCHCCQFPAPLRPHVVWFGEMPLGMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKLLKGLKAGSIA
1	MUSTER	1s5pA	0.973	0.930	3.646	threading_1	--KPRVLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQVLDWTGDV-----TPEDKCP--LRPHVVWFGEMPLGMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQ---EFAEKYYGPASQVVPEFVEKLLKGLK-----
2	SPARKS	3u31a	0.275	0.975	5.535	threading_2	KKCKHVVALTGSGTSAESNIPSFRGSNSIWSKYDPRIYGTIWGFWKYPEKIWEVIRDISSD---YEIEINNGHVALSTLESL-GYLKSVVTQNVDGLHEASGNTKVISLHGNVFEAVCCTCNKIVKLNKIMLQKTLPPECPCGGIFKPNIILFGEVVDLLKEAEEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINISKTYITNKSDYHVCAKFSEL-TKVANILKGSSKNKKI-
3	PROSPECT2	3jwpA	0.271	0.946	4.560	threading_3	KKCKHVVALTGSGTSAESNIPSFRGSSNIWSKYDPRIYGTIWGFWKYPEKIWEVIRDISSD---YEIEINNGHVALSTLESL-GYLKSVVTQNVDGLHEASGNTKVISLHGNVFEAVCCTCNKIVKLNKTSHFHQLPPECPCGGIFKPNIILFGEVVSSLKEAEEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINISKTYITNKSDYHVCAKFSELTKVANILK---------G
4	PPA-I	1s5pA	0.960	0.930	5.328	threading_4	--KPRVLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQVLDW-----TGDVTPEDKCP--LRPHVVWFGEMPLGMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQ---EFAEKYYGPASQVVPEFVEKLLKGLK-----
5	HHPRED-l	1s5p_A	1.000	0.930	4.589	threading_5	--KPRVLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQVLDWTGDVTPEDKC-------PLRPHVVWFGEMPLGMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQ---EFAEKYYGPASQVVPEFVEKLLKGLK-----
6	HHPRED-g	1s5p_A	1.000	0.930	3.937	threading_6	--KPRVLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQVLDWTGDVTPEDKC-------PLRPHVVWFGEMPLGMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQ---EFAEKYYGPASQVVPEFVEKLLKGLK-----
7	SP3	3u31a	0.275	0.975	5.476	threading_7	KKCKHVVALTGSGTSAESNIPSFRGSNSIWSKYDPRIYGTIWGFWKYPEKIWEVIRDISSDY---EIEINNGHVALSTLESL-GYLKSVVTQNVDGLHEASGNTKVISLHGNVFEAVCCTCNKIVKLNKIMLQKTLPPECPCGGIFKPNIILFGEVVDLLKEAEEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINISKTYITNKMDYHVCAKFSEL-TKVANILKGSSKNKKI-
8	SAM-T99	1iciA	0.398	0.955	5.076	threading_8	AESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRMEK--VFNAQPNKAHQAFAELERL-GVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVESAPKIPPLPKCDKCGSLLRPGVVWFGEMLPPLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHVRK--------
9	MUSTER	1iciA	0.399	0.963	3.388	threading_9	AESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRMEKVFN--AQPNKAHQAFAELERL--VLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVESAPKIPPLPKCDKCGSLLRPGVVWFGEMPDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHVRKALS-----
10	SPARKS	1icia	0.397	0.967	5.156	threading_10	AESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRMEKVF--NAQPNKAHQAFAELERL-GVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVESAPKIPPLPKCDKCGSLLRPGVVWFGEMLDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHVRKALS-----

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.963 to 1s5pA TM-score=0.997 to native SCOP code=c.31.1.5	TM-score=0.963 to 1s5pA TM-score=0.998 to native SCOP code=c.31.1.5	TM-score=0.857 to 1iciA TM-score=0.860 to native SCOP code=c.31.1.5	TM-score=0.817 to 1iciA TM-score=0.841 to native SCOP code=c.31.1.5	TM-score=0.963 to 1s5pA TM-score=0.997 to native SCOP code=c.31.1.5

Experimental Structure

Download 1s5pA

SCOP code=c.31.1.5