Template-based Modeling Results for NLPD_ECOLI

Submitted Primary Sequence

>Length 379
MSAGSPKFTVRRIAALSLVSLWLAGCSDTSNPPAPVSSVNGNAPANTNSGMLITPPPKMGTTSTAQQPQIQPVQQPQIQATQQPQIQPVQPVAQQPVQMENGRIVYNRQYGNIPKGSYSGSTYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYALNVGQTLQVGNASGTPITGGNAITQADAAEQGVVIKPAQNSTVAVASQPTITYSESSGEQSANKMLPNNKPTATTVTAPVTVPTASTTEPTVSSTSTSTPISTWRWPTEGKVIETFGASEGGNKGIDIAGSKGQAIIATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYLPQR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSAGSPKFTVRRIAALSLVSLWLAGCSDTSNPPAPVSSVNGNAPANTNSGMLITPPPKMGTTSTAQQPQIQPVQQPQIQATQQPQIQPVQPVAQQPVQMENGRIVYNRQYGNIPKGSYSGSTYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYALNVGQTLQVGNASGTPITGGNAITQADAAEQGVVIKPAQNSTVAVASQPTITYSESSGEQSANKMLPNNKPTATTVTAPVTVPTASTTEPTVSSTSTSTPISTWRWPTEGKVIETFGASEGGNKGIDIAGSKGQAIIATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYLPQR
CCCCCCCEEHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEECCCCCCEEEECCCEEEEEECCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCEECCCCEEEEECCCCCCCCCEEEEEEECCEECCHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSAGSPKFTVRRIAALSLVSLWLAGCSDTSNPPAPVSSVNGNAPANTNSGMLITPPPKMGTTSTAQQPQIQPVQQPQIQATQQPQIQPVQPVAQQPVQMENGRIVYNRQYGNIPKGSYSGSTYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYALNVGQTLQVGNASGTPITGGNAITQADAAEQGVVIKPAQNSTVAVASQPTITYSESSGEQSANKMLPNNKPTATTVTAPVTVPTASTTEPTVSSTSTSTPISTWRWPTEGKVIETFGASEGGNKGIDIAGSKGQAIIATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYLPQR
5533122120210000000001000013223120212213122222222122222213212222233232222332323223223232233223322313224222343213123122212101024111011002211130310032041312220311210111222122221122223222233222232233222212232222223222332233212333322222223222222222322222222222222120003020012012232213000000121110000030100000211310000000202211000000011121333220221120010012222112000101231211111310244
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSAGSPKFTVRRIAALSLVSLWLAGCSDTSNPPAPVSSVNGNAPANTNSGMLITPPPKMGTTSTAQQPQIQPVQQPQIQATQQPQIQPVQPVAQQPVQMENGRIVYNRQYGNIPKGSYSGSTYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYALNVGQTLQVGNASGTPITGGNAITQADAAEQGVVIKPAQNSTVAVASQPTITYSESSGEQSANKMLPNNKPTATTVTAPVTVPTASTTEPTVSSTSTSTPISTWRWPTEGKVIETFGASEGGNKGIDIAGSKGQAIIATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYLPQR
1	MUSTER	1qwyA	0.269	0.588	1.613	threading_1	--------------------------------------------------------------------------------------------------------------------VSYGTYYTIDSGDYHHT-----GNWNQAMFDNKEYSYTFVDAQGHTHYFYNC---YPKNANANGSGQTYVNPATAGDNNDYTASQSQQHINQYGYQSNVGPD------------------------------ASYYSSGHAKDASWLTSRKQLQPYGQYHGGHYGVDYAMPENSPVYSLTDGTVVQAGWSNYGGGNQVTIKEANSNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTGNSTPHVHFQRMSGGYAVDPTSYL--Q
2	PROSPECT2	2gu1A	0.176	0.810	3.033	threading_2	VKVGDTLSGIFASILQKILSVDLDHLQLDMIQPGEELELMMDDMGQLSRLIYHMSIVEKAIYTRENDGSFSYDFQE-------------------------------------ISGEWREILFSGEINGSFSVSARRVGLTSSQVANITDKIDFSRSLRADRFDI------------------------LVKQQYLGEHNTGNSEIKAISFKLAKGDVSAFLAEDGRFYDRAGNSLERAFNRYPVDKAYRQITSGFNPKRKHPVTGRV--------VPHNGTDFATPIGAPVYSTGDGKVIVVRKH-PYAGNYLVIEHNSVYKTRYLHLDKILVKKGQLVKRGQKIALAGATGRLTPHLHFEVLVRNRPVDAMKDLP--
3	SPARKS	2gu1a	0.226	0.678	4.050	threading_3	-----------------------------------------------------------------------------------------------------------------------RIHYMVKVGDTLSGIFAQLGVPYSILQKILSVDLDHMIQPGEELELMMDDMGQLSTRENDGSFSYDFQEISGEWREILFSGEINGSFSVSARRVGLTSKDKIDFSRSLRADKLAKGDVSAFLAEDGRFYDRAGNSLERAFNRYPVDRQITSGFNPKRKPHNGTDFATPIGAPVYSTGDGKVIVVRK-HPYAGNYLVIEHNSVYKTRYLHLDKILVKKGQLVKRGQKIALAGATGRLTPHLHFEVLVRNRPVDAMKDLP--
4	PPA-I	1qwyA	0.231	0.583	1.846	threading_4	------------------------------------------------------------------------------------------------------------------------------------------------------------VSYGTYYTIDSNGDYHHTPDGNWNQAMFDNKEYSYTFVDAQGHTHYFYNCYPKNANANGSGQTYVNPATAGDNNDYTASQSQYGYQSNVGPDASYYSSGHAKDASWLTSRKQLQPYGQYHGGHYGVDYAMPENSPVYSLTDGTVVQAGWSNYGGGNQVTIKEANSNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTGNSTPHVHFQRMSGGIAVDPTSYLQ--
5	HHPRED-l	2gu1_A	0.215	0.675	6.540	threading_5	-----------------------------------------------------------------------------------------------------------------------RIHYMVKVGDTLSGIFAQLGVPYSILQKILSHLQLDMIQPGEELELMMDDMGQLSIVEKAIYTRENDGSFSYDSGELFSGEINSLTSSVMKDKIRA-LVKQQYLGNSEIKAISFKLAKGDVSAFLAEDGDRAGNSLERAFNRYPVDRQITSGFNPKRVPHNGTDFATPIGAPVYSTGDGKVIVVRKH-PYAGNYLVIEHNSVYKTRYLHLDKILVKKGQLVKRGQKIALAGATGRLTPHLHFEVLVRNRPVDAMKALP--
6	HHPRED-g	2gu1_A	0.230	0.675	5.921	threading_6	-----------------------------------------------------------------------------------------------------------------------RIHYMVKVGDTLSGIFAQLGVPYSILQKILSVLQLDMIQPGEELELMMDDMGQLSRLIYHMSYTRENDGSYDFQENGSFSVSARKIDFSRSLRA-DILVKQQYLGEHNTNSEIKAISFKLASAFLAEDGDRAGNSLERAFNRYPVDKQITSGFNPKRVPHNGTDFATPIGAPVYSTGDGKVIVVRKH-PYAGNYLVIEHNSVYKTRYLHLDKILVKKGQLVKRGQKIALAGATGRLTPHLHFEVLVRNRPVDAMKALP--
7	SP3	2hsia	0.173	0.594	3.447	threading_7	-----------------------------------------------------------------------------------------------------------SFIMRLLNKPVPGGVAVVDLGEE--------------------GPPPRAFYQGKPVLVVREEGRRWIAVVGIPLSTKPGPQKLEVRAATGNHEERFSV---------------------GSKPEDLKRIERELAEQTAAYRRFSPGLPSNLMLDKPVDGPLSSPFP-----HSGLDFAVPAGTPIKAPAAGKVILIGD-YFFNGKTVFVDHGQGFISMFCHLSKIDVKLGQQVPRGGVLGKVGATGRATPHMHWNVSLNDARVDPAIFIGAF
8	SAM-T99	2gu1A	0.329	0.409	4.617	threading_8	-------------------------------------------------------------------------------------------------------------------------HYMVKVGDTLSGIFAQLGVPYSILQKILSVDLDDMIQPGEELELMNPK------------------------------------------------------------------------------------------RKHPVTGRVVP--------HNGTDFATPIGAPVYSTGDGKVIVVRK-HPYAGNYLVIEHNSVYKTRYLHLDKILVKKGQLVKRGQKIALAGATGRTGPHLHFEVLVRNRPVDAMKA----
9	MUSTER	2hsiB	0.159	0.599	1.507	threading_9	----------------------------------------------------------------------------------------------------------------------------------------------SFIMRL--LNKPV---PGGVAVVDLGEEGPPPRAFYQGKPVLVVREEGRRWIAVVGIPLSTKPGPQKLEVRAATGNHEERFSVGSKLPEDLKRIERELAEQTAAYRRFSPGLPSNLMLDKPVDGPLSSPF----GPHSGLDFAVPAGTPIKAPAAGKVILIGD-YFFNGKTVFVDHGQGFISMFCHLSKIDVKLGQQVPRGGVLGKVGATGRATPHMHWNVSLNDARVDPAIFIGAF
10	SPARKS	2hsia	0.156	0.594	3.707	threading_10	----------------------------------------------------------------------------------------------------------------------------------------------SFIMRL--LNKPV---PGGVAVVDLGEEGPPPRAFYQGKPVLVVREEGRRWIAVVGIPLSTKPG-PQKLEVRAATGNHEERFSVGSKPEDLKRIERELAEQTAAYRRFSPGLPSNLMLDKPVDGPLSSPF-----PHSGLDFAVPAGTPIKAPAAGKVILIGD-YFFNGKTVFVDHGQGFISMFCHLSKIDVKLGQQVPRGGVLGKVGATGRATPHMHWNVSLNDARVDPAIFIGAF

Predicted Tertiary Structure


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TM-score=0.752 to 1qwyA SCOP code=b.84.3.2	TM-score=0.525 to 1qwyA SCOP code=b.84.3.2	TM-score=0.754 to 1qwyA SCOP code=b.84.3.2	TM-score=0.513 to 1qwyA SCOP code=b.84.3.2	TM-score=0.736 to 1qwyA SCOP code=b.84.3.2