Template-based Modeling Results for NIKD_ECOLI

Submitted Primary Sequence

>Length 254
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESPFIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSDGKIVEQGDVETLFNAPKHTVTRSLVSAHLALYGMELAS
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESPFIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSDGKIVEQGDVETLFNAPKHTVTRSLVSAHLALYGMELAS
CCCCEEEECCEEEEEEECCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEECCEEEECCCCHHHCCCCCCEEEEEECCCHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESPFIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSDGKIVEQGDVETLFNAPKHTVTRSLVSAHLALYGMELAS
55411202201020212013100010251100000021211200000001000221120120100021310120202121000001201110111011111021002202332112011100220203202201430111011000000000000102010000120102100100020010022004424000000000000003001100000102001202021012112120020003001223224225
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESPFIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSDGKIVEQGDVETLFNAPKHTVTRSLVSAHLALYGMELAS
1	MUSTER	2zu0C	0.226	0.906	2.449	threading_1	---MLSIKDLHVSVDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR--EDYEVTGGTVEFKGKDLLALSPEG--IFMAFQYP--VEIPGVSNQFFLQTALNAVRRFDFQDLMEEKIALLKMPE--DLLTSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDG-KRSFIIVTHYQRILDYIPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGW--------LTEQ----
2	SPARKS	1b0ua	0.243	0.941	4.176	threading_2	--NKLHVIDLHKRYGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS----EGAIIVNGQNINLVRDKDGRLTMVFQHF--NLWSHMTVLENVMEAPIQVSKHDARERALKYLAKVGID--ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGSLKKLEH----
3	PROSPECT2	2d3wA	0.222	0.906	3.674	threading_3	M---LSIKDLHVSVDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR--EDYEVTGGTVEFKGKDLLALSRAGEGIFMAFQYPV--EIPGVSNQFFLQTALNAVDRFDFQDLMEEKIALLKMPE-DLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDG-KRSFIIVTHYQRILDYIPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGW---------------L
4	PPA-I	2zu0C	0.219	0.917	4.185	threading_4	---MLSIKDLHVSVDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR--EDYEVTGGTVEFKGKDLLALSRAGEGIFMAFQYP--VEIPGVSNQFFLQTALNAVRRFDFQDLMEEKIALLKMPE-DLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDG-KRSFIIVTHYQRILDYIPDYVHVLYQGRIVKSGDFTLVKQLEEQGYG--------WLTEQ----
5	HHPRED-l	1b0u_A	0.255	0.941	2.335	threading_5	--NKLHVIDLHKRYGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE----KPSEGAIIVNGQNINLVRLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQLSKHDARERALKYLAKVGID--ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLA-EEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGSLKKL--EH--
6	HHPRED-g	1b0u_A	0.248	0.937	2.374	threading_6	--NKLHVIDLHKRYGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS----EGAIIVNGQNINQLRLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQVSKHDARERALKYLAKVGID--ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGLKKLEH-----
7	SP3	1b0ua	0.244	0.937	3.922	threading_7	K---LHVIDLHKRYGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS----EGAIIVNGQNINLVRDKDGRLTMVFQHF--NLWSHMTVLENVMEAPIQVSKHDARERALKYLAKVGID--ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGSLKKLEH----
8	SAM-T99	3dhwC	0.279	0.961	2.688	threading_8	KLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELSELTKARRQIGMIFQ--HFNLLSSRTVFGNVALPLELDPKDEVKRRVTELLSLVGLGD---KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDY-
9	MUSTER	3gfoA	0.253	0.933	2.353	threading_9	EDYILKVEELNYNYGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP----SSGRILFDNKPIGIMKLR-ESIGIVFQDPDNQL---ASVYQDVSFGAVNMPEDEIRKRVDNALKRTGIEH---LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK--EVIRKVNLRLPRI--MEI--
10	SPARKS	3dhwc	0.295	0.949	3.809	threading_10	---MIKLSNITKVFTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTTLSAR-RQIGMIFQH--FNLLSSRTVFGNVALPLELDPKDEVKRRVTELLSLVGLGD---KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQ

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.795 to 1ji0A SCOP code=c.37.1.12	TM-score=0.809 to 1vplA SCOP code=c.37.1.12	TM-score=0.921 to 1b0uA SCOP code=c.37.1.12	TM-score=0.774 to 1ji0A SCOP code=c.37.1.12	TM-score=0.793 to 1ji0A SCOP code=c.37.1.12