Template-based Modeling Results for NIKB_ECOLI

Submitted Primary Sequence

>Length 314
MLRYVLRRFLLLIPMVLAASVIIFLMLRLGTGDPALDYLRLSNLPPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDFGISFASQRPVLDDMLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMGYGGWQHIILPAVSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLNDKQTERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIRRHEGAHA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLRYVLRRFLLLIPMVLAASVIIFLMLRLGTGDPALDYLRLSNLPPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDFGISFASQRPVLDDMLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMGYGGWQHIILPAVSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLNDKQTERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIRRHEGAHA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEHHHCHHHHHHHHHHHHHHHHHHHHHCHHHHEHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLRYVLRRFLLLIPMVLAASVIIFLMLRLGTGDPALDYLRLSNLPPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDFGISFASQRPVLDDMLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMGYGGWQHIILPAVSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLNDKQTERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIRRHEGAHA
21310021011000000000000000030021000100031132311230011013300022000100010002002001010122322002101310111022001111122111101010012343310100020001001000100100000000012031010112110100000000000000010010001100210113000103122023100002100310000000000010010010000011000020001000100132111001000000000000010000000000012033332244
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLRYVLRRFLLLIPMVLAASVIIFLMLRLGTGDPALDYLRLSNLPPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDFGISFASQRPVLDDMLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMGYGGWQHIILPAVSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLNDKQTERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIRRHEGAHA
1	MUSTER	2onkC	0.165	0.774	1.027	threading_1	------MRLLFSALLALLSSIILLFVLL-----PVAATVTLQLFN-------------------FDEFLKAASD-----------------PAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKS-FPGKSVVEGIVDLPVVIPHTVAGIALLVVFG--GSFSPLKFVDA---LPGIVVAMLFVSVPIYINQAKEGFASV-DVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISGAVVV--IAYYPMIAPTLIYERYL-GLS----AAMPVAAILILLSLAVFVALRII-------VG---
2	SPARKS	2onkc	0.128	0.774	1.402	threading_2	------MRLLFSALLALLSSIILLFVL-------LPVAATVTLQLFNFDEFLKAAS----------------------D------------PAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFPGK-SVVEGIVDLPVVIPHTVAGIALLVVFGLIGSFSPLKFVDALPGIVVAMLFVS---VPIYINQAKEGFAS-VDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISGAVVV-----IAYAPTLIYERYLSEGLSAAMPVAAILILLSLAVFVALRIIVG--------------
3	PROSPECT2	1ee4a	0.077	0.946	1.565	threading_3	MTQQLQLSATVKFRQILLQLEAAWALTNIASGTSAQTKVVVDADGDSTDYRDYVLQCNAMKPSLIRTATWTLSNLCRGKKPQPDWMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL----VKLLEVAE------------DKTKKEACWAISNASSGGLQRPDIIRYLVSQGCI-KPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGG
4	PPA-I	3dhwA	0.143	0.624	3.673	threading_4	------------------------------------------------------------------------------------------MWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVIANAKLYRTVSAIVNIFRSIP-FIILLVWMIPFTRVIVGTSIG-------LQAAIVPLTVGAAPFIARMVENALLEI-PTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMG-GAVGAGGLGQIGYQYGYIGNATVMNTVLVLLVILVYLIQFAGD------------------
5	HHPRED-l	3tui_A	0.148	0.666	5.017	threading_5	-------------------------------------------------------------------------------------MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGT-----SIGL---QAAIVPLTVGAAPFIARMVENALLE-IPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGG-AVGAGGLGQIGYQYGYIGNATVMNTVLVLLVILVYLIQFAGDRIVRAVTR----------
6	HHPRED-g	3tui_A	0.158	0.666	4.883	threading_6	-------------------------------------------------------------------------------------MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGT----S-IGLQAAIVP---LTVGAAPFIARMVENALLE-IPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGG-AVGAGGLGQIGYQYGYIGNATVMNTVLVLLVILVYLIQFAGDRIVRAVTR----------
7	SP3	3dhwa	0.143	0.624	1.594	threading_7	------------------------------------------------------------------------------------------MWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGTSIG--------LQAAIVPLTVGAAPFIARMVENALLEI-PTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMG-GAVGAGGLGQIGYQYGYIGNATVMNTVLVLLVILVYLIQFAGD------------------
8	SAM-T99	3dhwA	0.149	0.643	0.613	threading_8	MW------------------------------------------------------------------------------------------LLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRIPFIILLVWMIPFTRVIVGTSIGLQAAIVP---LTVGAAPFIARMVENALLE-IPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAV-GAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYL--------------IQFAGD---
9	MUSTER	3dhwA	0.148	0.624	0.927	threading_9	------------------------------------------------------------------------------------------MWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRNAKLYRTVSAIVNIFRSIP-FIILLVWMIPFTRVIVGTSIG-------LQAAIVPLTVGAAPFIARMVENALLEI-PTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAV-GAGGLGQIGYQYGYIGNATVMNTVLVLLVILVYLIQFAGD------------------
10	SPARKS	3dhwa	0.143	0.624	1.400	threading_10	------------------------------------------------------------------------------------------MWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRNAKLYRTVSAIVNIFRSIP-----FIILLVWMIPF--TRVIVGTSIG-LQAAIVPLTVGAAPFIARMVENALLEI-PTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAV-GAGGLGQIGYQYGYIGNATVMNTVLVLLVILVYLIQFAGD------------------

Predicted Tertiary Structure


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TM-score=0.764 to 3d31C SCOP code=f.58.1.1	TM-score=0.805 to 1t5jA SCOP code=a.209.1.1	TM-score=0.812 to 2onkC SCOP code=f.58.1.1	TM-score=0.714 to 1wa5B SCOP code=a.118.1.1	TM-score=0.760 to 3dhwA SCOP code=f.58.1.1