Template-based Modeling Results for NFNB_ECOLI


  Submitted Primary Sequence

>Length 217
MDIISVALKRHSTKAFDASKKLTPEQAEQIKTLLQYSPSSTNSQPWHFIVASTEEGKARVAKSAAGNYVFNERKMLDASHVVVFCAKTAMDDVWLKLVVDQEDADGRFATPEAKAANDKGRKFFADMHRKDLHDDAEWMAKQVYLNVGNFLLGVAALGLDAVPIEGFDAAILDAEFGLKEKGYTSLVVVPVGHHSVEDFNATLPKSRLPQNITLTEV
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDIISVALKRHSTKAFDASKKLTPEQAEQIKTLLQYSPSSTNSQPWHFIVASTEEGKARVAKSAAGNYVFNERKMLDASHVVVFCAKTAMDDVWLKLVVDQEDADGRFATPEAKAANDKGRKFFADMHRKDLHDDAEWMAKQVYLNVGNFLLGVAALGLDAVPIEGFDAAILDAEFGLKEKGYTSLVVVPVGHHSVEDFNATLPKSRLPQNITLTEV
CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHCHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MDIISVALKRHSTKAFDASKKLTPEQAEQIKTLLQYSPSSTNSQPWHFIVASTEEGKARVAKSAAGNYVFNERKMLDASHVVVFCAKTAMDDVWLKLVVDQEDADGRFATPEAKAANDKGRKFFADMHRKDLHDDAEWMAKQVYLNVGNFLLGVAALGLDAVPIEGFDAAILDAEFGLKEKGYTSLVVVPVGHHSVEDFNATLPKSRLPQNITLTEV
4311210221100321322341233102101200220111221100000001133012200400101121113202301000000022211111021001111221322222021012202310131233112200200010000000000000111201001030011200121021334210000000002212332222234221223200121
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMDIISVALKRHSTKAFDASKKLTPEQAEQIKTLLQYSPSSTNSQPWHFIVASTEEGKARVAKSAAGNYVFNERKMLDASHVVVFCAKTAMDDVWLKLVVDQEDADGRFATPEAKAANDKGRKFFADMHRKDLHDDAEWMAKQVYLNVGNFLLGVAALGLDAVPIEGFDAAILDAEFGLKEKGYTSLVVVPVGHHSVEDFNATLPKSRLPQNITLTEV
1MUSTER3of4A0.2240.9453.083threading_1-YLEKLQQWRYATADFSG-AHITDDVLDKLLNTTRLTASSYGLQPYCTLVIRNKGLREQLVNHS-----FGQQKVADSSALVIFAAKTGAVADIVDPYISELSQQRQLTNEEAENTRNYFTQKLQAS----AATRKEWAVRQAYIGLGTFLLAAAELEVDSCP-EGIEHDAYDNILSLKDLGLSTVFACPVGYRSEADTTQFQKKVRQPLSRFKVVL
2SPARKS3of4a0.2240.9454.689threading_2-YLEKLQQWRYATADFSG-AHITDDVLDKLLNTTRLTASSYGLQPYCTLVIRNKGLREQLVNHS-----FGQQKVADSSALVIFAAKTGAVADIVDPYISELSQQRQLTNEEAENTRNYFTQKLQ----ASAATRKEWAVRQAYIGLGTFLLAAAELEVDSCP-EGIEHDAYDNILSLKDLGLSTVFACPVGYRSEADTTQFQKKVRQPLSRFKVVL
3PROSPECT23of4A0.2200.9453.950threading_3-YLEKLQQWRYATADFSG-AHITDDVLDKLLNTTRLTASSYGLQPYCTLVIRNKGLREQLVNHSF-----GQQKVADSSALVIFAAKTGAVADIVDPYISELSQQRQLTNEEAENTRNYFTQKL----QASAATRKEWAVRQAYIGLGTFLLAAAELEVDSCP-EGIEHDAYDNILSLKDLGLSTVFACPVGYRSEADTTQFQKKVRQPLSRFKVVL
4PPA-I3of4A0.2240.9453.023threading_4-YLEKLQQWRYATADFSG-AHITDDVLDKLLNTTRLTASSYGLQPYCTLVIRNKGLREQLVNHS-----FGQQKVADSSALVIFAAKTGAVADIVDPYISELSQQRQLTNEEAENTRNYFTQKLQAS----AATRKEWAVRQAYIGLGTFLLAAAELEVDSCP-EGIEHDAYDNILSLKDLGLSTVFACPVGYRSEADTTQFQKKVRQPLSRFKVVL
5HHPRED-l1icr_A1.0000.9912.766threading_5-DIISVALKRHSTKAFDASKKLTPEQAEQIKTLLQYSPSSTNSQPWHFIVASTEEGKARVAKSAAGNYVFNERKMLDASHVVVFCAKTAMDDVWLKLVVDQEDADGRFATPEAKAANDKGRKFFADMHRKDLHDDAEWMAKQVYLNVGNFLLGVAALGLDAVPIEGFDAAILDAEFGLKEKGYTSLVVVPVGHHSVEDFNATLPKSRLPQNITLTE-
6HHPRED-g1icr_A1.0000.9952.422threading_6-DIISVALKRHSTKAFDASKKLTPEQAEQIKTLLQYSPSSTNSQPWHFIVASTEEGKARVAKSAAGNYVFNERKMLDASHVVVFCAKTAMDDVWLKLVVDQEDADGRFATPEAKAANDKGRKFFADMHRKDLHDDAEWMAKQVYLNVGNFLLGVAALGLDAVPIEGFDAAILDAEFGLKEKGYTSLVVVPVGHHSVEDFNATLPKSRLPQNITLTEV
7SP33of4a0.2240.9454.608threading_7-YLEKLQQWRYATADFSG-AHITDDVLDKLLNTTRLTASSYGLQPYCTLVIRNKGLREQLVNHS-----FGQQKVADSSALVIFAAKTGAVADIVDPYISELSQQRQLTNEEAENTRNYFTQKLQ----ASAATRKEWAVRQAYIGLGTFLLAAAELEVDSCP-EGIEHDAYDNILSLKDLGLSTVFACPVGYRSEADTTQFQKKVRQPLSRFKVVL
8SAM-T991vfrA0.3190.9824.173threading_8--IIHDLENRYTSKKYDPSKKVSQEDLAVLLEALRLSASSINSQPWKFIVIESDAAKQRMHDSFANMHQFNQPHIKACSHVILFANKLSYTRDDYDVVLSKAVADKRITEEQKEAAFASFKFVELNC--DENGEHKAWTKPQAYLALGNALHTLARLNIDSTTMEGIDPELLSEIFADELKGYECHVALAIGYHHPSDYNASLPKSRKAFEDVITIL
9MUSTER1vfrA0.3120.9913.001threading_9HPIIHDLENRYTSKKYDPSKKVSQEDLAVLLEALRLSASSINSQPWKFIVIESDAAKQRMHDSFANMHQFNQPHIKACSHVILFANKLSYTRDDYDVVLSKAVADKRITEEQKEAAFASFKFVELNCDEN--GEHKAWTKPQAYLALGNALHTLARLNIDSTTMEGIDPELLSEIFADELKGYECHVALAIGYHHPSEYNASLPKSRKAFEDVITIL
10SPARKS1icra1.0000.9954.419threading_10-DIISVALKRHSTKAFDASKKLTPEQAEQIKTLLQYSPSSTNSQPWHFIVASTEEGKARVAKSAAGNYVFNERKMLDASHVVVFCAKTAMDDVWLKLVVDQEDADGRFATPEAKAANDKGRKFFADMHRKDLHDDAEWMAKQVYLNVGNFLLGVAALGLDAVPIEGFDAAILDAEFGLKEKGYTSLVVVPVGHHSVEDFNATLPKSRLPQNITLTEV

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.838 to 1noxA
TM-score=0.826 to native
SCOP code=d.90.1.1		 TM-score=0.833 to 1vfrA
TM-score=0.830 to native
SCOP code=d.90.1.1		 TM-score=0.829 to 2b67A
TM-score=0.817 to native
SCOP code=d.90.1.1		 TM-score=0.827 to 1vfrA
TM-score=0.822 to native
SCOP code=d.90.1.1		 TM-score=0.838 to 1noxA
TM-score=0.826 to native
SCOP code=d.90.1.1

  Experimental Structure

Download 1ds7A
SCOP code=d.90.1.1