Template-based Modeling Results for NARK_ECOLI

Submitted Primary Sequence

>Length 463
MSHSSAPERATGAVITDWRPEDPAFWQQRGQRIASRNLWISVPCLLLAFCVWMLFSAVAVNLPKVGFNFTTDQLFMLTALPSVSGALLRVPYSFMVPIFGGRRWTAFSTGILIIPCVWLGFAVQDTSTPYSVFIIISLLCGFAGANFASSMANISFFFPKQKQGGALGLNGGLGNMGVSVMQLVAPLVVSLSIFAVFGSQGVKQPDGTELYLANASWIWVPFLAIFTIAAWFGMNDLATSKASIKEQLPVLKRGHLWIMSLLYLATFGSFIGFSAGFAMLSKTQFPDVQILQYAFFGPFIGALARSAGGALSDRLGGTRVTLVNFILMAIFSGLLFLTLPTDGQGGSFMAFFAVFLALFLTAGLGSGSTFQMISVIFRKLTMDRVKAEGGSDERAMREAATDTAAALGFISAIGAIGGFFIPKAFGSSLALTGSPVGAMKVFLIFYIACVVITWAVYGRHSKK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSHSSAPERATGAVITDWRPEDPAFWQQRGQRIASRNLWISVPCLLLAFCVWMLFSAVAVNLPKVGFNFTTDQLFMLTALPSVSGALLRVPYSFMVPIFGGRRWTAFSTGILIIPCVWLGFAVQDTSTPYSVFIIISLLCGFAGANFASSMANISFFFPKQKQGGALGLNGGLGNMGVSVMQLVAPLVVSLSIFAVFGSQGVKQPDGTELYLANASWIWVPFLAIFTIAAWFGMNDLATSKASIKEQLPVLKRGHLWIMSLLYLATFGSFIGFSAGFAMLSKTQFPDVQILQYAFFGPFIGALARSAGGALSDRLGGTRVTLVNFILMAIFSGLLFLTLPTDGQGGSFMAFFAVFLALFLTAGLGSGSTFQMISVIFRKLTMDRVKAEGGSDERAMREAATDTAAALGFISAIGAIGGFFIPKAFGSSLALTGSPVGAMKVFLIFYIACVVITWAVYGRHSKK
CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEECCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSHSSAPERATGAVITDWRPEDPAFWQQRGQRIASRNLWISVPCLLLAFCVWMLFSAVAVNLPKVGFNFTTDQLFMLTALPSVSGALLRVPYSFMVPIFGGRRWTAFSTGILIIPCVWLGFAVQDTSTPYSVFIIISLLCGFAGANFASSMANISFFFPKQKQGGALGLNGGLGNMGVSVMQLVAPLVVSLSIFAVFGSQGVKQPDGTELYLANASWIWVPFLAIFTIAAWFGMNDLATSKASIKEQLPVLKRGHLWIMSLLYLATFGSFIGFSAGFAMLSKTQFPDVQILQYAFFGPFIGALARSAGGALSDRLGGTRVTLVNFILMAIFSGLLFLTLPTDGQGGSFMAFFAVFLALFLTAGLGSGSTFQMISVIFRKLTMDRVKAEGGSDERAMREAATDTAAALGFISAIGAIGGFFIPKAFGSSLALTGSPVGAMKVFLIFYIACVVITWAVYGRHSKK
5533222342201102303131220034302300011000000000000000000000000023111301231000000000000000000010002201022100000000000000000012122111100000000000000000011010121013210000100000001000000100000000000111111211322312311001001000000111121012223322224220320020033220000000000000000000000010012202210000000000000000100010002211101000000000000000000101231310100000000000000010120000100020032101121423222232012201110100000000000000010020000002111111000000000000000000001024345
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSHSSAPERATGAVITDWRPEDPAFWQQRGQRIASRNLWISVPCLLLAFCVWMLFSAVAVNLPKVGFNFTTDQLFMLTALPSVSGALLRVPYSFMVPIFGGRRWTAFSTGILIIPCVWLGFAVQDTSTPYSVFIIISLLCGFAGANFASSMANISFFFPKQKQGGALGLNGGLGNMGVSVMQLVAPLVVSLSIFAVFGSQGVKQPDGTELYLANASWIWVPFLAIFTIAAWFGMNDLATSKASIKEQLPVLKRGHLWIMSLLYLATFGSFIGFSAGFAMLSKTQFPDVQILQYAFFGPFIGALARSAGGALSDRLGGTRVTLVNFILMAIFSGLLFLTLPTDGQGGSFMAFFAVFLALFLTAGLGSGSTFQMISVIFRKLTMDRVKAEGGSDERAMREAATDTAAALGFISAIGAIGGFFIPKAFGSSLALTGSPVGAMKVFLIFYIACVVITWAVYGRHSKK
1	MUSTER	1pw4A	0.136	0.907	1.974	threading_1	FKPAPHKARL---------PAAEI--DPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYL--VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS-SIAVMFVLLFLCGWFGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN----DWHAALYMPAFCAILVALFAFAMMRDTPQ-SCGLPPIEEYKNDTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVFALDKSSWAYFLYEYAGIPGTLLCGWMSDKFRGNRGATGVFFMTLVTIATIVYWM---NPAGNPTVDMICMIVIGFLIY---GPV-----MLIGLHALELAPK-------------KAAGTAAGFTGLFGYLGGVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGQLLQE
2	SPARKS	1pw4a	0.126	0.909	5.162	threading_2	FKPAPHKARLPAAEI-----------DPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYL--VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFV-PWATSSIAVMFVLLFLCGWFQGGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGI----PPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC-GLPPIEEYKNDTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHLDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN--RGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIY-------------GPVMLIGLHALELAPKKA--------AGTAAGFTGLFGYLGGVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGRRHEQ
3	PROSPECT2	1pw4A	0.128	0.911	2.989	threading_3	FKPAPHKARLP-------AAEIDPTYR----RLRWQIFLGIFFGYAAYYLVRKNFALAMPYL--VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW-----FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV--YWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA---------------------AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGELVP
4	PPA-I	1pw4A	0.124	0.905	3.736	threading_4	KPAPHKARLPAAEI------------DPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYL--VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVP-WATSSIAVMFVLLFLCGWFGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN----DWHAALYMPAFCAILVALFAFAMMRDTPQS-CGLPPIEEYKNDTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVFALDKSSWAYFLYEYAGIPGTLLCGWMSDKFRGNRGATGVFFMTLVTIATIVYWM---NPAGNPTVDMICMIVIGFLIY-----------GPVMLIGLHALELAPK----------KAAGTAAGFTGLFGYLGGVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGQLLQE
5	HHPRED-l	3o7q_A	0.101	0.832	5.224	threading_5	-------------------------------RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQA-FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFAEI-----MNYTLFLVGLFIIAAGLGCETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVSLVLSVQTPYMIIVAIVLLVALLIML--TKFPALQ----SDNHSDAKQGSSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIGAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-------GGHVGL-IALTLCSAFMSIQYPTIFSLGIKNLGQ----------------------DTKYGSSFI-VMTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFAR--FRSQT--
6	HHPRED-g	3o7q_A	0.101	0.834	4.886	threading_6	-------------------------------RSYIIPFALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFAEI-----MNYTLFLVGLFIIAAGLGLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVSLVLSVQTPYMIIVAIVLLVALLIMLT--KFPALQSD---NHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIGMGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA----G---GHVGL-IALTL----CSAFMSIQYPTIFS-------LGIKNL---G--------QDTKYGSSFI-VMTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARF--RSQT--
7	SP3	1pw4a	0.126	0.907	4.742	threading_7	FKPAPHKARL---------PAAEI--DPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYL--VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFV-PWATSSIAVMFVLLFLCGWFQGGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA----WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC-GLPPIEEYKNDTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN--RGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA---------------------AGTAAGFTGLFGYLGGVAASAIVGYTVDFFGWD-GGFMVMIGGSILAVILLIVVMKRRHEQ
8	SAM-T99	1pw4A	0.128	0.892	2.696	threading_8	FKPAPHKARLPAAEIDP-----------TYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ--GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFV-PWATSSIAVMFVLLFLCGWFQGGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN-----WHAALYMPAFCAILVALFAFAMMRDTPQ-SCGLPPIEEYKNDTAKQIFMQYVLPNKLLWYIAIVYLLRY----GILDWSPTYLKEVKALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFGNRGATGVFFMTLVTIATIVYWMN----PAGNPTVDMICMIVIGFL--------------------IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR--
9	MUSTER	3o7pA	0.116	0.838	1.402	threading_9	-----------------------------------RSYIIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE--IMNYTLFLVGLFIIAAGLGCLETAAPFVTVLGPESSGHFRLNLAQTFASFGAIIAVVFGQSLIQDVLDKMSPEQLSAYKHSLVYMIIVAIVLLVALLIMLTKFPALDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA--------GGHVGLIALTLCSAFMSI-------QYPTIFSLGIK----NLG-----------QDTKYGSSFIVMT--IGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARF-----RSQ
10	SPARKS	3o7pa	0.132	0.834	2.968	threading_10	-----------------------------------RSYIIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE--IMNYTLFLVGLFIIAAGLGCLETAAPFVTVLGPESSGHFRLNLAQTFASFGAIIAV----VFGQSLILSNVPHQSQDVLDKMPYMIIVAIVLLVALLIMLTKFPALQSDNHSAKQGSFSASLSRLRIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF------AGGHVGLIALTLCSAFMSI---------QYPTIFSLGIKNL---------------GQDTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFAR--FRSQT--

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.895 to 1pw4A SCOP code=f.38.1.1	TM-score=0.870 to 1pw4A SCOP code=f.38.1.1	TM-score=0.899 to 1pw4A SCOP code=f.38.1.1	TM-score=0.911 to 1pw4A SCOP code=f.38.1.1	TM-score=0.893 to 1pw4A SCOP code=f.38.1.1