Template-based Modeling Results for NAGD_ECOLI

Submitted Primary Sequence

>Length 250
MTIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKAGFTITDVNPDFVIVGETRSYNWDMMHKAAYFVANGARFIATNPDTHGRGFYPACGALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSSLDDIDSMPFRPSWIYPSVAEIDVI
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKAGFTITDVNPDFVIVGETRSYNWDMMHKAAYFVANGARFIATNPDTHGRGFYPACGALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSSLDDIDSMPFRPSWIYPSVAEIDVI
CCEEEEEEECCCCEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCHHHEECHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCHHHEEEECCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCEEECCHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKAGFTITDVNPDFVIVGETRSYNWDMMHKAAYFVANGARFIATNPDTHGRGFYPACGALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSSLDDIDSMPFRPSWIYPSVAEIDVI
4301000000110001132003001200200143212000001222310310031023020301320000001000200332322200000212001101311121132211000002121211210120011113202000003122220111110000001130122211100312220020003213032300000012021001001201020000001212231032122301100110220333
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKAGFTITDVNPDFVIVGETRSYNWDMMHKAAYFVANGARFIATNPDTHGRGFYPACGALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSSLDDIDSMPFRPSWIYPSVAEIDVI
1	MUSTER	2c4nA	1.000	1.000	2.952	threading_1	MTIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKAGFTITDVNPDFVIVGETRSYNWDMMHKAAYFVANGARFIATNPDTHGRGFYPACGALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSSLDDIDSMPFRPSWIYPSVAEIDVI
2	SPARKS	3qgma	0.296	0.988	4.661	threading_2	PDKKGYIIDIDGVIGKSVTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFGLEVGEDEILVATYATARFIAREPNAKVFTTGEEGLIEELRLAGLEIVDDEAEYLVVGSNRKINFE-LTKALRACLRGIRYIATNPDPAEDGPIPGTGI-IGALYWTGREPDVVVGKPSEVIR-EALDILGLDAKDVAVVGDQIDVDVAAGKAIGAETVLVLTGVTTREQIERHGLKPDYVFNSLKDVEAL
3	PROSPECT2	3pdwA	0.311	0.976	4.472	threading_3	STYKGYLIDLDGTMYNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFDIPATEEQVFTTSMATAQHIAQKKDASVYVIGEEGIRQAIEENGLTFGGENADFVVVGIDRSITYEKFAVGCLAIRNGARFISTNGDIAERGLLPGNGSLTSVLTVSTGVQPVFIGKPESIIMEQAMRVLGTDVSETLMVGDNYATDIMAGINAGMDTLLVHTGMTDDME------KPTHAIDSLTEWIPY
4	PPA-I	2c4nA	1.000	1.000	2.974	threading_4	MTIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKAGFTITDVNPDFVIVGETRSYNWDMMHKAAYFVANGARFIATNPDTHGRGFYPACGALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSSLDDIDSMPFRPSWIYPSVAEIDVI
5	HHPRED-l	2c4n_A	1.000	0.996	2.384	threading_5	MTIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKAGFTITDVNPDFVIVGETRSYNWDMMHKAAYFVANGARFIATNPDTHGRGFYPACGALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSSLDDIDSMPFRPSWIYPSVAEIDV-
6	HHPRED-g	3kc2_A	0.204	0.980	3.343	threading_6	-KKIAFAFDIDGVLFRGKKPIAGASDALKLLNRNKIPYILLTNGGGFSERARTEFISKLDVDVSPLQIIQSHTPYKSLVNKYSR--ILAVGTPSVRGVAEGYGFQDVVKKFDAVLVFNDPHDWAADIQIISDAINSSIPIYFSNQDANPYKNRFGQGAFRLLVRRLNGEPLYTLGKPTKLTYDFAHHVLIDPFHAVF-VGDNPASDIIGAQNYGWNSCLVKTGVYNEGD-DLKECKPTLIVNDVFDAVTK
7	SP3	3qgma	0.300	0.988	4.807	threading_7	PDKKGYIIDIDGVIGKSVTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFGLEVGEDEILVATYATARFIAREPNAKVFTTGEEGLIEELRLAGLEIVDYEAEYLVVGSNRKINF-ELTKALRACLRGIRYIATNPDPAEDGPIPGTGIIGALY-WTGREPDVVVGKPSEVIR-EALDILGLDAKDVAVVGDQIDVDVAAGKAIGAETVLVLTGVTTRENLDQIELKPDYVFNSLKDVEAL
8	SAM-T99	1zjjB	0.324	0.976	3.988	threading_8	----AIIFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGIDVSSSIIITSGLATRLYMSKHLPGKIFVIGGEGLVKEMQALGWGIVWKEVKHVVVGLDPDLTYEKLKYATLAIRNGATFIGTNPDATLPGIYPGAGSIIAALKVATNVEPIIIGKPNEPMYEVVREMFPG--EELWMVGDRLDTDIAFAKKFGMKAIMVLTGVSSLEDIKKSEYKPDLVLPSVYELIDY
9	MUSTER	3pdwA	0.316	0.976	2.766	threading_9	LTYKGYLIDLDGTMYNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFDIPATEEQVFTTSMATAQHIAQQKDASVYVIGEEGIRQAIEENGLTFGGENADFVVVGIDRSITYEKFAVGCLAIRNGARFISTNGDIAERGLLPGNGSLTSVLTVSTGVQPVFIGKPESIIMEQAMRVLGTDVSETLMVGDNYATDIMAGINAGMDTLLVHTGMTDDME------KPTHAIDSLTEWIPY
10	SPARKS	2c4na	1.000	1.000	4.282	threading_10	MTIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKAGFTITDVNPDFVIVGETRSYNWDMMHKAAYFVANGARFIATNPDTHGRGFYPACGALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSSLDDIDSMPFRPSWIYPSVAEIDVI

Predicted Tertiary Structure


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TM-score=0.999 to 2c4nA TM-score=0.999 to native SCOP code=c.108.1.14	TM-score=0.999 to 2c4nA TM-score=0.999 to native SCOP code=c.108.1.14	TM-score=0.915 to 1ydfA TM-score=0.895 to native SCOP code=c.108.1.14	TM-score=0.902 to 2c4nA TM-score=0.902 to native SCOP code=c.108.1.14	TM-score=0.999 to 2c4nA TM-score=0.999 to native SCOP code=c.108.1.14

Experimental Structure

Download 2c4nA

SCOP code=c.108.1.14