Template-based Modeling Results for NADA_ECOLI

Submitted Primary Sequence

>Length 347
MSVMFDPDTAIYPFPPKPTPLSIDEKAYYREKIKRLLKERNAVMVAHYYTDPEIQQLAEETGGCISDSLEMARFGAKHPASTLLVAGVRFMGETAKILSPEKTILMPTLQAECSLDLGCPVEEFNAFCDAHPDRTVVVYANTSAAVKARADWVVTSSIAVELIDHLDSLGEKIIWAPDKHLGRYVQKQTGGDILCWQGACIVHDEFKTQALTRLQEEYPDAAILVHPESPQAIVDMADAVGSTSQLIAAAKTLPHQRLIVATDRGIFYKMQQAVPDKELLEAPTAGEGATCRSCAHCPWMAMNGLQAIAEALEQEGSNHEVHVDERLRERALVPLNRMLDFAATLRG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSVMFDPDTAIYPFPPKPTPLSIDEKAYYREKIKRLLKERNAVMVAHYYTDPEIQQLAEETGGCISDSLEMARFGAKHPASTLLVAGVRFMGETAKILSPEKTILMPTLQAECSLDLGCPVEEFNAFCDAHPDRTVVVYANTSAAVKARADWVVTSSIAVELIDHLDSLGEKIIWAPDKHLGRYVQKQTGGDILCWQGACIVHDEFKTQALTRLQEEYPDAAILVHPESPQAIVDMADAVGSTSQLIAAAKTLPHQRLIVATDRGIFYKMQQAVPDKELLEAPTAGEGATCRSCAHCPWMAMNGLQAIAEALEQEGSNHEVHVDERLRERALVPLNRMLDFAATLRG
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHCCCCCEEECCCCCCCCCHHHCCCHHHHHHHHHHCCCCEEEEEEECHHHHHHHCCEEEECCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEEEECCEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCHHCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSVMFDPDTAIYPFPPKPTPLSIDEKAYYREKIKRLLKERNAVMVAHYYTDPEIQQLAEETGGCISDSLEMARFGAKHPASTLLVAGVRFMGETAKILSPEKTILMPTLQAECSLDLGCPVEEFNAFCDAHPDRTVVVYANTSAAVKARADWVVTSSIAVELIDHLDSLGEKIIWAPDKHLGRYVQKQTGGDILCWQGACIVHDEFKTQALTRLQEEYPDAAILVHPESPQAIVDMADAVGSTSQLIAAAKTLPHQRLIVATDRGIFYKMQQAVPDKELLEAPTAGEGATCRSCAHCPWMAMNGLQAIAEALEQEGSNHEVHVDERLRERALVPLNRMLDFAATLRG
54322223221121033122122321120132023015423000000011121012002211101200010021024121100000002000200310033120001213020012110213102200321331100000001000323110000002012002202321220000022100210132121100002000000230223001201431130100001302310021012100121001003213322000001210012013212322002012223222030001011111200200020023322311020133012301100210011023235
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSVMFDPDTAIYPFPPKPTPLSIDEKAYYREKIKRLLKERNAVMVAHYYTDPEIQQLAEETGGCISDSLEMARFGAKHPASTLLVAGVRFMGETAKILSPEKTILMPTLQAECSLDLGCPVEEFNAFCDAHPDRTVVVYANTSAAVKARADWVVTSSIAVELIDHLDSLGEKIIWAPDKHLGRYVQKQTGGDILCWQGACIVHDEFKTQALTRLQEEYPDAAILVHPESPQAIVDMADAVGSTSQLIAAAKTLPHQRLIVATDRGIFYKMQQAVPDKELLEAPTAGEGATCRSCAHCPWMAMNGLQAIAEALEQEGSNHEVHVDERLRERALVPLNRMLDFAATLRG
1	MUSTER	2qs0A	0.370	0.841	2.872	threading_1	----------------------MEKVEELKKEIERLKKERNAIILAHNYQLPEVQDVADFVG----DSLELARKATKVDADVIVFAGVDFMAETAKILNPDKIVLIPN----KRMANMLKVKHILEAKKKYPNAPVVLYVNSTAETKAYADVTVTSANAVDIIRKL--DSDVIIFGPDKNLAHYVAKVTGKTIIPIEGHCYVHKKFTIEDVERAKKLHPNAKLMVHPECNPEVQEHADIIVSTGGMIRRA----CEWWVVFTEREMVYRLSKLYP---FYP---------AKEDAVCVGMKAITLQHVYESLRDMK--YEVTVPEEIAEKARKAIERMLEMS-----
2	SPARKS	1wzua	0.365	0.781	6.706	threading_2	--------------------------MDLVEEILRLKEERNAIILAHNYQLPEVQDIADFIG----DSLELARRATRVDADVIVFAGVDFMAETAKILNPDKVVLIPSV------------EHILEAKRKYPNAPVVLYVNSTAEAKAYADVTVTSANAVEVVKKL--DSDVVIFGPDKNLAHYVAKMTGK---------KIIPVFTLDDVERAKKLHPNAKLMIHPECIPEVQEKADIIASTGGMIKRACE--WDEWVVFTEREMVYRLRKLYPQKKFYPAR---------EDAFCAIT----LKNIYESLKDM--KYKVEVPEEIARKARKAIERMLEM------
3	PROSPECT2	1wzuA	0.373	0.781	4.146	threading_3	MD--------------------------LVEEILRLKEERNAIILAHNYQLPEVQDIADFIG----DSLELARRATRVDADVIVFAGVDFMAETAKILNPDKVVLIPSV------------EHILEAKRKYPNAPVVLYVNSTAEAKAYADVTVTSANAVEVVKKL--DSDVVIFGPDKNLAHYVAKMTGKKI---------IPVFTLDDVERAKKLHPNAKLMIHPECIPEVQEKADIIASTGGMIKRACE--WDEWVVFTEREMVYRLRKLYPQKKFYPAR---------EDAFCAIT----LKNIYESLKD--MKYKVEVPEEIARKARKAIERMLEM------
4	PPA-I	2qs0A	0.370	0.841	5.941	threading_4	----------------------MEKVEELKKEIERLKKERNAIILAHNYQLPEVQDVADFVG----DSLELARKATKVDADVIVFAGVDFMAETAKILNPDKIVLIPNKRMAN----MLKVKHILEAKKKYPNAPVVLYVNSTAETKAYADVTVTSANAVDIIRKL--DSDVIIFGPDKNLAHYVAKVTGKTIIPIEGHCYVHKKFTIEDVERAKKLHPNAKLMVHPECNPEVQEHADIIVSTGGMIRRA----CEWWVVFTEREMVYRLSKLYP---FYP---------AKEDAVCVGMKAITLQHVYESLRDMK--YEVTVPEEIAEKARKAIERMLEMS-----
5	HHPRED-l	1wzu_A	0.383	0.775	13.496	threading_5	--------------------------MDLVEEILRLKEERNAIILAHNYQLPEVQDIADFIG----DSLELARRATRVDADVIVFAGVDFMAETAKILNPDKVVLIPS------------VEHILEAKRKYPNAPVVLYVNSTAEAKAYADVTVTSANAVEVVKKLDS--DVVIFGPDKNLAHYVAKMTGKKII-----------FTLDDVERAKKLHPNAKLMIHPECIPEVQEKADIIASTGGMIKRACE--WDEWVVFTEREMVYRLRKLYPQKKFYPAR---------EDAFC----AITLKNIYESLKDM--KYKVEVPEEIARKARKAIERMLEM------
6	HHPRED-g	1wzu_A	0.379	0.775	10.998	threading_6	--------------------------MDLVEEILRLKEERNAIILAHNYQLPEVQDIADFIG----DSLELARRATRVDADVIVFAGVDFMAETAKILNPDKVVLIPS------------VEHILEAKRKYPNAPVVLYVNSTAEAKAYADVTVTSANAVEVVKKLD--SDVVIFGPDKNLAHYVAKMTGKKII-----------FTLDDVERAKKLHPNAKLMIHPECIPEVQEKADIIASTGGMIKRACE--WDEWVVFTEREMVYRLRKLYPQKKFYPAR---------EDAFC----AITLKNIYESLKDM--KYKVEVPEEIARKARKAIERMLEM------
7	SP3	1wzua	0.369	0.781	7.264	threading_7	--------------------------MDLVEEILRLKEERNAIILAHNYQLPEVQDIADFIG----DSLELARRATRVDADVIVFAGVDFMAETAKILNPDKVVLIPSV------------EHILEAKRKYPNAPVVLYVNSTAEAKAYADVTVTSANAVEVVKKL--DSDVVIFGPDKNLAHYVAKMTG---------KKIIPVFTLDDVERAKKLHPNAKLMIHPECIPEVQEKADIIASTGGMIKRACE--WDEWVVFTEREMVYRLRKLYPQKKFYPA---------REDAFCAIT----LKNIYESLKDM--KYKVEVPEEIARKARKAIERMLEM------
8	SAM-T99	2qs0A	0.377	0.841	10.386	threading_8	----------------------MEKVEELKKEIERLKKERNAIILAHNYQLPEVQDVAD----FVGDSLELARKATKVDADVIVFAGVDFMAETAKILNPDKIVLIPNK----RMANMLKVKHILEAKKKYPNAPVVLYVNSTAETKAYADVTVTSANAVDIIRKLDSD--VIIFGPDKNLAHYVAKVTGKTIIPIPGHCYVHKKFTIEDVERAKKLHPNAKLMVHPECNPEVQEHADIIVSTGGMIRRA----CEWWVVFTEREMVYRLSKLYP---FYPA---------KEDAVCVGMKAITLQHVYESLRDMKY--EVTVPEEIAEKARKAIERMLEMS-----
9	MUSTER	2qs0A1	0.376	0.314	0.847	threading_9	----------------------MEKVEELKKEIERLKKERNAIILAHNYQLPEVQDVADFVG----DSLELARKATKVDADVIVFAGVDFMAETAKILNPDKIVLIPNKRVCVGMKAITLQHVYESLRDMKYEVT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10	SPARKS	1ovma	0.139	0.911	0.944	threading_10	LPAKKAATPPVNALTHKQAHADSACLKAFRDAAENKLAMKRTALLARHGLKHALQKWVKEVPGIFDEGSASTGAVKEEGADTVLCVGTRFTAGFTHQLTPAQTIEVPHWFTGIPMNQA--IETLVELCKQHVHAPD------------------GSLTQENFWRTLQTRPGDIILADQGTSAFGAIDLRADVNFIVQPLWGSIG-YTLAAAFGAQTACPNRRVIV-------LTGDGAAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHIPQALSQSECWRVSEAEQLADVLEKVAHHEEVMLPKADIPPLLGALTKALEACNN---

Predicted Tertiary Structure


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TM-score=0.412 to 1ba2A SCOP code=c.93.1.1	TM-score=0.410 to 1ba2A SCOP code=c.93.1.1	TM-score=0.386 to 1zbmA SCOP code=c.94.1.1	TM-score=0.386 to 2fyiC SCOP code=c.94.1.1	TM-score=0.412 to 1ba2A SCOP code=c.93.1.1