Template-based Modeling Results for MSCM_ECOLI

Submitted Primary Sequence

>Length 415
MQDLISQVEDLAGIEIDHTTSMVMIFGIIFLTAVVVHIILHWVVLRTFEKRAIASSRLWLQIITQNKLFHRLAFTLQGIIVNIQAVFWLQKGTEAADILTTCAQLWIMMYALLSVFSLLDVILNLAQKFPAASQLPLKGIFQGIKLIGAILVGILMISLLIGQSPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGAVIDIGLTTVKVRNWDNTITTIPTWSLVSDSFKNWSGMSASGGRRIKRSISIDVTSIRFLDEDEMQRLNKAHLLKPYLTSRHQEINEWNRQQGSTESVLNLRRMTNIGTFRAYLNEYLRNHPRIRKDMTLMVRQLAPGDNGLPLEIYAFTNTVVWLEYESIQADIFDHIFAIVEEFGLRLHQSPTGNDIRSLAGAFKQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MQDLISQVEDLAGIEIDHTTSMVMIFGIIFLTAVVVHIILHWVVLRTFEKRAIASSRLWLQIITQNKLFHRLAFTLQGIIVNIQAVFWLQKGTEAADILTTCAQLWIMMYALLSVFSLLDVILNLAQKFPAASQLPLKGIFQGIKLIGAILVGILMISLLIGQSPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGAVIDIGLTTVKVRNWDNTITTIPTWSLVSDSFKNWSGMSASGGRRIKRSISIDVTSIRFLDEDEMQRLNKAHLLKPYLTSRHQEINEWNRQQGSTESVLNLRRMTNIGTFRAYLNEYLRNHPRIRKDMTLMVRQLAPGDNGLPLEIYAFTNTVVWLEYESIQADIFDHIFAIVEEFGLRLHQSPTGNDIRSLAGAFKQ
CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEEEEEEEEEEECCCCCEEEEECHHHHCCCEECCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MQDLISQVEDLAGIEIDHTTSMVMIFGIIFLTAVVVHIILHWVVLRTFEKRAIASSRLWLQIITQNKLFHRLAFTLQGIIVNIQAVFWLQKGTEAADILTTCAQLWIMMYALLSVFSLLDVILNLAQKFPAASQLPLKGIFQGIKLIGAILVGILMISLLIGQSPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGAVIDIGLTTVKVRNWDNTITTIPTWSLVSDSFKNWSGMSASGGRRIKRSISIDVTSIRFLDEDEMQRLNKAHLLKPYLTSRHQEINEWNRQQGSTESVLNLRRMTNIGTFRAYLNEYLRNHPRIRKDMTLMVRQLAPGDNGLPLEIYAFTNTVVWLEYESIQADIFDHIFAIVEEFGLRLHQSPTGNDIRSLAGAFKQ
3420022013101131310000000000000000001000110002002210311332012001212001100000000000000011023022002001000000000000000000021012002212212322130002001000000000000011011101000000000000000001200100000000001210310000101422120101100000020111221000000120022102111122221001020000010221311032102202313223321223233012113321123111122210100001100120033123133310000101211430020000000212212101101210011002003312020011111210320122155
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MQDLISQVEDLAGIEIDHTTSMVMIFGIIFLTAVVVHIILHWVVLRTFEKRAIASSRLWLQIITQNKLFHRLAFTLQGIIVNIQAVFWLQKGTEAADILTTCAQLWIMMYALLSVFSLLDVILNLAQKFPAASQLPLKGIFQGIKLIGAILVGILMISLLIGQSPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGAVIDIGLTTVKVRNWDNTITTIPTWSLVSDSFKNWSGMSASGGRRIKRSISIDVTSIRFLDEDEMQRLNKAHLLKPYLTSRHQEINEWNRQQGSTESVLNLRRMTNIGTFRAYLNEYLRNHPRIRKDMTLMVRQLAPGDNGLPLEIYAFTNTVVWLEYESIQADIFDHIFAIVEEFGLRLHQSPTGNDIRSLAGAFKQ
1	MUSTER	2vv5A	0.172	0.617	1.684	threading_1	-----------------------------------------------------------------------------------------------LSYAVNIVAALAIIIVGLIIARMISNAVNRLMISRK-IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLG--GVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREP---VRRNEFIIGVAYDS-------------------------------------------------DIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSG---DLQNVYWDVLERIKREFDAAGISFPYPQMDVNFKRV------
2	PROSPECT2	3a6pA1	0.097	0.918	1.761	threading_2	ALKFCEEFKEKCPAEKTQVAIVRHFGLQILLKNSVMELIANRIVVEMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQN--MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLED--------------------------RKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSALFRHEILSRDPLLLAIIPKYLRASMTNLVKM------GFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLST
3	PROSPECT2	1jdha	0.077	0.969	1.735	threading_3	VNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNVETARCTAGTLHNLS--HHREGLLAIFKSGGIPALVKMFYAITTLHNLLLHQEGAKMAVRGLQKMVALLFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLCSSNKPAIVEAGGMQALGLHLSQRLVQNCLWTLRNLSDAATKQEGMVQLLGSDDINVVTCAAGILSNLTCNNYKNK----MMVCQVGGAGDREDITEPAICALRHLTSRHQEAEMAQNAVLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQFVEGVRMEEIVEGC-------TGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAQDKEAAEAIEAEGS
4	PROSPECT2	1m5ya	0.077	0.848	1.713	threading_4	VDGLMQSVKLNAAQARQQLPDDATLRHQI---------MERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQN-------------NMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEV--RNNEVRRRITILPQEVESLAQQVTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRKKGDIVGPIRSGVGFHILK-----------------VNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVH------SSFGWHLIELLDTRNVDRAYRMKFSEEAASWMQEQRASAYVKI----------------LS
5	SPARKS	1mxma	0.177	0.612	4.095	threading_5	------------------------------------------------------------------------------------------------YAVNIVAALAIIIVGLIIARMISNAVNRLMISRK--IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLG--GVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSRE---PVRRNEFIIGVAYD-------------------------------------------------SDIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSGD---LQNVYWDVLERIKREFDAAGISFPYPQMDVNFKRV------
6	PROSPECT2	1mxma	0.177	0.612	2.159	threading_6	YAVNIVA----------------------ALAIIIVGLIIARMISNAVNRLMISRKI----------------------------------------------------------------------------DATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLG--GVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAG---NIINFSREPVRRNEFIIGVAYD-------------------------------------------------SDIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSGDL---QNVYWDVLERIKREFDAAGISFPYPQMDVNFKRV------
7	PPA-I	2vv5A	0.172	0.617	2.745	threading_7	-----------------------------------------------------------------------------------------------LSYAVNIVAALAIIIVGLIIARMISNAVNRLMISRK-IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLG--GVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREP---VRRNEFIIGVAYDS-------------------------------------------------DIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSG---DLQNVYWDVLERIKREFDAAGISFPYPQMDVNFKRV------
8	HHPRED-l	2vv5_A	0.172	0.617	8.471	threading_8	-----------------------------------------------------------------------------------------------LSYAVNIVAALAIIIVGLIIARMISNAVNRLMIS-RKIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLG--GVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREP---VRRNEFIIGVAYDSDIDQVKQI-------------------------------------------------LTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSG---DLQNVYWDVLERIKREFDAAGIS-FPYPQMD-VNF--KRV--
9	HHPRED-g	2vv5_A	0.173	0.600	4.882	threading_9	-----------------------------------------------------------------------------------------------LSYAVNIVAALAIIIVGLIIARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGR-VGVQTASVIAVLGAAGLVVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLG--GVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSRE---PVRRNEFIIGVAYDS-------------------------------------------------DIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSG---DLQNVYWDVLERIKREFDAAGISFNFKRV-------------
10	SP3	1mxma	0.165	0.612	4.050	threading_10	-------------------------------------------------------------------------------------------------YAVNIVAALAIIIVGLIIARMISNAVNRLMISRK-IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLG--GVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSRE---PVRRNEFIIGVAYD-------------------------------------------------SDIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSGDL---QNVYWDVLERIKREFDAAGISFPYPQMDVNFKRV------

Predicted Tertiary Structure


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TM-score=0.632 to 2vv5A SCOP code=b.38.1.3	TM-score=0.587 to 1u6gC SCOP code=a.118.1.2	TM-score=0.629 to 2vv5A SCOP code=b.38.1.3	TM-score=0.665 to 1wa5B SCOP code=a.118.1.1	TM-score=0.597 to 1m5yD SCOP code=a.223.1.2