Template-based Modeling Results for RODA_ECOLI

Submitted Primary Sequence

>Length 370
MTDNPNKKTFWDKVHLDPTMLLILLALLVYSALVIWSASGQDIGMMERKIGQIAMGLVIMVVMAQIPPRVYEGWAPYLYIICIILLVAVDAFGAISKGAQRWLDLGIVRFQPSEIAKIAVPLMVARFINRDVCPPSLKNTGIALVLIFMPTLLVAAQPDLGTSILVALSGLFVLFLSGLSWRLIGVAVVLVAAFIPILWFFLMHDYQRQRVMMLLDPESDPLGAGYHIIQSKIAIGSGGLRGKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVGILILLALYILLIMRGLWIAARAQTTFGRVMAGGLMLILFVYVFVNIGMVSGILPVVGVPLPLVSYGGSALIVLMAGFGIVMSIHTHRKMLSKSV
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTDNPNKKTFWDKVHLDPTMLLILLALLVYSALVIWSASGQDIGMMERKIGQIAMGLVIMVVMAQIPPRVYEGWAPYLYIICIILLVAVDAFGAISKGAQRWLDLGIVRFQPSEIAKIAVPLMVARFINRDVCPPSLKNTGIALVLIFMPTLLVAAQPDLGTSILVALSGLFVLFLSGLSWRLIGVAVVLVAAFIPILWFFLMHDYQRQRVMMLLDPESDPLGAGYHIIQSKIAIGSGGLRGKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVGILILLALYILLIMRGLWIAARAQTTFGRVMAGGLMLILFVYVFVNIGMVSGILPVVGVPLPLVSYGGSALIVLMAGFGIVMSIHTHRKMLSKSV
CCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTDNPNKKTFWDKVHLDPTMLLILLALLVYSALVIWSASGQDIGMMERKIGQIAMGLVIMVVMAQIPPRVYEGWAPYLYIICIILLVAVDAFGAISKGAQRWLDLGIVRFQPSEIAKIAVPLMVARFINRDVCPPSLKNTGIALVLIFMPTLLVAAQPDLGTSILVALSGLFVLFLSGLSWRLIGVAVVLVAAFIPILWFFLMHDYQRQRVMMLLDPESDPLGAGYHIIQSKIAIGSGGLRGKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVGILILLALYILLIMRGLWIAARAQTTFGRVMAGGLMLILFVYVFVNIGMVSGILPVVGVPLPLVSYGGSALIVLMAGFGIVMSIHTHRKMLSKSV
5533333311012010000000000000000000011021220010110000000000000000201130020000000000000000020112224001000101102000120010000000020023222222132000000000000000012221010000000000000011021200000000000000000121023101200100001331222201200100000011002030123123221310123110000000021011000000000000000000100130322001000000000000100000000000000110000100110000000000000000021123222434
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTDNPNKKTFWDKVHLDPTMLLILLALLVYSALVIWSASGQDIGMMERKIGQIAMGLVIMVVMAQIPPRVYEGWAPYLYIICIILLVAVDAFGAISKGAQRWLDLGIVRFQPSEIAKIAVPLMVARFINRDVCPPSLKNTGIALVLIFMPTLLVAAQPDLGTSILVALSGLFVLFLSGLSWRLIGVAVVLVAAFIPILWFFLMHDYQRQRVMMLLDPESDPLGAGYHIIQSKIAIGSGGLRGKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVGILILLALYILLIMRGLWIAARAQTTFGRVMAGGLMLILFVYVFVNIGMVSGILPVVGVPLPLVSYGGSALIVLMAGFGIVMSIHTHRKMLSKSV
1	MUSTER	3zuxA	0.141	0.784	0.838	threading_1	--------NILSKISIGKTFSLWAALFAAAAFFA-----PDTFKWAG--YIPWLLGIIMFGMGLTLKPDILFKHPKVVIIGVIAQFAIMPATA----CLSKLLNL------PAEIAVGVILVGCC---------PGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMQAAGMLMSIVKMVLLPIVLGLIVHKVLG-SKTEKLTDALPLVSVAAIVLIIGAVV---------------------------GASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGM------NSGLAAALAPVVAVP------GALFSVWHNISGSLLATYWAAKA------
2	SPARKS	2xwub	0.137	0.886	1.175	threading_2	LQDSELFDSSVEAIVRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEKEQFRIYRVDISDTLMYVYE-MLGAELLSNLYDKLGRLLTSYSWQHTEALLYGFQSIAET-----IDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIG-------------ALSEWL-ADHPVMINSVLPLVLHALGNPELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLM----------KQIHKT------------SQCMWLMQALGFLLSVEEILKNLHSLI
3	PROSPECT2	1jdha	0.085	0.957	1.761	threading_3	AVVNLKKEASRHAIMRSPQMVSAIVRTMQCTAGTLHNLSHHREGLLADSVLFYAITTLHNLLLHQEGAKMAVRLAGGLKFLAITTDCLQILAYGNQESKLIILASGGPTYTYEKLLWTTSRVLGMQALGLHLTDPSQRLVQNCLWTLRNLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL-----------HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRRLVQLLVRAHQDTQEIVEGCTGALHILARDVHNRIVIRGLNTIPLF---VQLLYSPIENIQ--RVAAGVLCELEAAEAIEAEGA
4	PPA-I	3zuxA	0.091	0.681	1.046	threading_4	LKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLE------IQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLII------GAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIE--------VGMQNSGLAAALA----------------AAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKA----------------------------------------------------------------------------------
5	HHPRED-l	1j4n_A	0.149	0.562	0.186	threading_5	MASEFKKKLFWRAVVAE-FLAMILFIFISIGSALGFHYKGAVQDNVKVSLAF-GLSIAGLLLSCQISVLRAIMYIIAQCVGAIVATAILSITSSNSLGLNAL--APGVSGQGIEIIGTLQ-LVLCVLATTDRRRRDLGGSGPGFSVALGHLLADYTGCGINPARSFGSSVITHN--FQDHWIFW-VGPFIGAALAVLIYDFILAPDLTDRVKVWTS----------------------------------------------------------------------------------------------------------------------------------------------------------
6	HHPRED-g	1j4n_A	0.130	0.559	0.529	threading_6	MASEFKKKLFWRAVVA-EFLAMILFIFISIGSALGFPSTGAVQDNVKVSLAF---GLSIATLSCQISVLRAIMYIIAQCVGAIVATAILSITSSLSLGLNALAGVNSGQGLGIEIIGTLQLVLCVLATTDRRRDLGSGPLAIGFSVALGHLLADYTGCGINPARSFG----SSVITHNFQWIFWVGPF-IGAALAVLIYDFILASDLTDRVKVWTS----------------------------------------------------------------------------------------------------------------------------------------------------------
7	SP3	1t90a	0.130	0.957	1.004	threading_7	DVVNPATKEVLCQVPITKEDIDYAAQTAAEAFKTWSKVAVPRRARILFNFQQLLKEELAHLITIENGKNTKEALGEVGRGIENVEFAPSLMMGDSIATDVEAANYGVFILKPSERT-PLLTEKLVELFEKAGLPK---GVFNVVYGAHDVVNGILEHPEIGVGEYVYKKGSETIVLNDANLEDTVTNIVGAAFGSAVTVEEGIADEFMAKLQEKVNGLDDGVFLGKKRTLSYIEKGLGAVCD-GRENVSDDGYFVGPNVTTE--MTIWKDE--IFAPVLSVIRVKN-LKEAIEIANKSE--FA--NGACSNAIRYFRENIDAGML-GILGVP-APMAFFPFSGWKSSFFTLHANGKDSVDTRKKVVTARY
8	SAM-T99	3a2rX	0.162	0.651	0.548	threading_8	IADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGR---------------------------------------ESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFANTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAK-------NNEVGSIKGKK--------------------------------------HEQTQVAATAAYRFGNVT------------------------------PRVSY----------AHGFKAKVNGVKDA-----
9	MUSTER	3gi9C	0.147	0.922	0.794	threading_9	MELKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVIAFIHKAINIITGALSILLWMSYVISIAL--AKGFPLIAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFA-PDLAVSGMIFASAIFFLSYMGIEIFISILIVMFVYVGVAISAIGNLPIDELIKALAVAA-----KPFLGNLGFLLISIGSSAMNATIYGGASLAKDGELPEWFK-VLFALLMEGVASITSAVFMVIYLFVILSHYILIDEVGGRFSFIVVLGVFLLLLYYQWIT--------R------------FVFYGIIATFIGVLIFEIIYRKVTKRTF
10	SPARKS	1jdha	0.091	0.830	1.040	threading_10	LLHQEGAKMAVRLAGGLQKMVALLVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS-----------VCSSNKPAIVEAGGMQADPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL-------LGSDDI--NVVTCAAGILSNLTCNNYKNKMMVCVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL------------HYGLPVVVKLLHPPSH-------------------WPLIKATVGLIRNLALCPANHAPLREQG-----AIPRLVQLLVRAHTQFVEGVRM-------EEIVEGCTGALHILARDVHNRIVIRGL

Predicted Tertiary Structure


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TM-score=0.404 to 2r2vA SCOP code=h.1.3.1	TM-score=0.416 to 2r2vA SCOP code=h.1.3.1	TM-score=0.589 to 1qgkA SCOP code=a.118.1.1	TM-score=0.667 to 1wa5B SCOP code=a.118.1.1	TM-score=0.421 to 1u6gC SCOP code=a.118.1.2