Template-based Modeling Results for PBP2_ECOLI

Submitted Primary Sequence

>Length 633
MKLQNSFRDYTAESALFVRRALVAFLGILLLTGVLIANLYNLQIVRFTDYQTRSNENRIKLVPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDNVQQTLDALRSVVDLTDDDIAAFRKERARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKGYKRRYYPYGSALTHVIGYVSKINDKDVERLNNDGKLANYAATHDIGKLGIERYYEDVLHGQTGYEEVEVNNRGRVIRQLKEVPPQAGHDIYLTLDLKLQQYIETLLAGSRAAVVVTDPRTGGVLALVSTPSYDPNLFVDGISSKDYSALLNDPNTPLVNRATQGVYPPASTVKPYVAVSALSAGVITRNTTLFDPGWWQLPGSEKRYRDWKKWGHGRLNVTRSLEESADTFFYQVAYDMGIDRLSEWMGKFGYGHYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIPVGIGQGYWTATPIQMSKALMILINDGIVKVPHLLMSTAEDGKQVPWVQPHEPPVGDIHSGYWELAKDGMYGVANRPNGTAHKYFASAPYKIAAKSGTAQVFGLKANETYNAHKIAERLRDHKLMTAFAPYNNPQVAVAMILENGGAGPAVGTLMRQILDHIMLGDNNTDLPAENPAVAAAEDH
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKLQNSFRDYTAESALFVRRALVAFLGILLLTGVLIANLYNLQIVRFTDYQTRSNENRIKLVPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDNVQQTLDALRSVVDLTDDDIAAFRKERARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKGYKRRYYPYGSALTHVIGYVSKINDKDVERLNNDGKLANYAATHDIGKLGIERYYEDVLHGQTGYEEVEVNNRGRVIRQLKEVPPQAGHDIYLTLDLKLQQYIETLLAGSRAAVVVTDPRTGGVLALVSTPSYDPNLFVDGISSKDYSALLNDPNTPLVNRATQGVYPPASTVKPYVAVSALSAGVITRNTTLFDPGWWQLPGSEKRYRDWKKWGHGRLNVTRSLEESADTFFYQVAYDMGIDRLSEWMGKFGYGHYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIPVGIGQGYWTATPIQMSKALMILINDGIVKVPHLLMSTAEDGKQVPWVQPHEPPVGDIHSGYWELAKDGMYGVANRPNGTAHKYFASAPYKIAAKSGTAQVFGLKANETYNAHKIAERLRDHKLMTAFAPYNNPQVAVAMILENGGAGPAVGTLMRQILDHIMLGDNNTDLPAENPAVAAAEDH
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHCEEEEEEECCCCCCEECCCCCEEEECCEEEEEEEEHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCHHHHHEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEECCCCCCCEEEEEHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCEEEECCCCEEEEECCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEECCEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKLQNSFRDYTAESALFVRRALVAFLGILLLTGVLIANLYNLQIVRFTDYQTRSNENRIKLVPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDNVQQTLDALRSVVDLTDDDIAAFRKERARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKGYKRRYYPYGSALTHVIGYVSKINDKDVERLNNDGKLANYAATHDIGKLGIERYYEDVLHGQTGYEEVEVNNRGRVIRQLKEVPPQAGHDIYLTLDLKLQQYIETLLAGSRAAVVVTDPRTGGVLALVSTPSYDPNLFVDGISSKDYSALLNDPNTPLVNRATQGVYPPASTVKPYVAVSALSAGVITRNTTLFDPGWWQLPGSEKRYRDWKKWGHGRLNVTRSLEESADTFFYQVAYDMGIDRLSEWMGKFGYGHYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIPVGIGQGYWTATPIQMSKALMILINDGIVKVPHLLMSTAEDGKQVPWVQPHEPPVGDIHSGYWELAKDGMYGVANRPNGTAHKYFASAPYKIAAKSGTAQVFGLKANETYNAHKIAERLRDHKLMTAFAPYNNPQVAVAMILENGGAGPAVGTLMRQILDHIMLGDNNTDLPAENPAVAAAEDH
553332243222111101100000000000000000000000000202212221342212101111220201022011002111001010113303313200300120030233101102323242331100102231232101200122130310102121112112110001000001321331023133323222122222102200120011113223011101112412213312222232131010000210120022114322000000003101000000112111211231112210220132331100020021112100100000000002221123322000201020211212010033212030201200230010000200110002100200140011230102023132110123311143143311301000000010210000000020000002301011010011124432202222333332131322003102200100024330001111112202000100001112342332232331232221000000000143010000000221320110010012001200223332322233222222448
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKLQNSFRDYTAESALFVRRALVAFLGILLLTGVLIANLYNLQIVRFTDYQTRSNENRIKLVPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDNVQQTLDALRSVVDLTDDDIAAFRKERARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKGYKRRYYPYGSALTHVIGYVSKINDKDVERLNNDGKLANYAATHDIGKLGIERYYEDVLHGQTGYEEVEVNNRGRVIRQLKEVPPQAGHDIYLTLDLKLQQYIETLLAGSRAAVVVTDPRTGGVLALVSTPSYDPNLFVDGISSKDYSALLNDPNTPLVNRATQGVYPPASTVKPYVAVSALSAGVITRNTTLFDPGWWQLPGSEKRYRDWKKWGHGRLNVTRSLEESADTFFYQVAYDMGIDRLSEWMGKFGYGHYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIPVGIGQGYWTATPIQMSKALMILINDGIVKVPHLLMSTAEDGKQVPWVQPHEPPVGDIHSGYWELAKDGMYGVANRPNGTAHKYFASAPYKIAAKSGTAQVFGLKANETYNAHKIAERLRDHKLMTAFAPYNNPQVAVAMILENGGAGPAVGTLMRQILDHIMLGDNNTDLPAENPAVAAAEDH
1	MUSTER	1mwrB	0.241	0.885	3.212	threading_1	VKD-QDRKIKKRVDAQYKIKTNYGNIDRNVQFNFVKEDGWKLDW-DHSVIIPGQKDQSIHIENLKSERGKILDRNNVELANTGTAYEIGIVPKNVSK--KDYKAIAKELSISEDYIKQQDQNWVQDDTF--VPLKTVKKDEYLSDFAKKF----HLTTNETESRNYPLEKATSHLLGYVGPINSEELKQKEYKG----YKDDAVIGKKGLEKLYDKKLQHEDGYRVTIVDDSNTIAHTLIEKKKKDGKDIQLTIDAKVQKSIYNNK-NDYGSGTAIHPQTGELLALVSTPSYDVYPFYG--SNEEYNKLTEDKKEPLLNKF-QITTSPGSTQKILTAIG-LNNKTLDDKTSYKIDGKGWQKDKS--WGGYNEVVNGNIDLKQAIESSDNIFFARVALELGSKKFEKG-KKLGVGEDIPSDYPFYNAQ------ISNKNLDNEILLADS---GYGQGEILINPVQILSIYSALENNGNINAPHLLKDTKN----------KVWKKNIISKENINLLTDGQQVVNKTHKEDI----YRSYANLIGKSGTAELKG----------------RQIGWFISYDK-DNPNAINVKDVQDKG-ASYNAKISGKVYDELYENGNKKYDIDE----------
2	SPARKS	3oc2a	0.262	0.765	5.938	threading_2	-------------------------------------------------------ARSVRHIAIPAHRGLITDRNGEPLAVSTPVTTLWANPKELMTAKERWPQLAAALGQDTKLFADRIEQNAEREF---IYLVRGLTPEQGEGVI--ALKVPGVYSIEEFRRFYPAGEVVAHAVGFTDV---------------------DDRGREGIELAFDEWLAGVPGKRQVLKDRRGRVIKDVQTKNAKPGKTLALSIDLRLQYLAHRELRNKAGSLVIMDVKTGEILAMTNQPTYNPNNR-RNLQPAAMR-----------NRAMIDVFEPGSTVKPFSMSAALASGRWKPSDIVDYPGTLQIGR--YTIRDVSR-NSRQLDLTGILIKSSNVGISKIAFDIGAESIYSVMQQVGLGQDTGLGFPGERVGNLPNH--------RKWPKAETATLAYGYG-LSVTAIQLAHAYAALANDGKSVPLSMTRV-----------DRVPDGVQVISPEVASTVQGMLQQVVE-AQGGVFRAQV-PGYHAAGKSGTAR-------KAYR-----------SLFAGFAPATDPRIAMVVVIDEPFGGLVSAPVFSKVMAGALRNVPPDNL-------------
3	PROSPECT2	2wadA	0.238	0.803	5.100	threading_3	--------------------------------------------------------SQTK-VTTSSARGEIYDASGKPLVENTLKQVVSFTRSNKMTATDLKEIAKKLLTYVKKEIYLFSQLNAVGNFATGTIATDPLNDSQVAVIASISKEMPGISISTSWDRKILETS-LSSIVGSVSSEKAGLPAEEAESYLKKGYSLNDRVGTSYLEKQYEEVLQGKRPVKEIHLDKHGDMESVENIEEGSKGKNIKLTIDLAFQDSVDALLKSEGVYAVALNPQTGAVLSMSGLK-HDLK---------------TGELTPDSLGTVTNVFVPGSVVKAATISSGWENGVLSGNQTLTDQPIVFQGSAP--IYSWYKLAYGSITAVEALEYSSNAYVVQTALGIMMGKLRSTFGEYGLGSATGIDLPDESTGLVPK----------EYNFANFITNAFGQFD-NYTPMQLAQYVATIANNGVRLAPHIVEGIYDNNDLIQAIDTKEINKVNISESDMAILHQGFYQVSHGPLTTGRAFSDGATVSISGKTGT-----------------------NTNAVAYAPTENPQIAVAVVFPHNTNLTVGPAIARDIINLYNQHHP---------------MN
4	PPA-I	1mwrB2	0.256	0.807	7.187	threading_4	-----------------------------------------------------QKDQSIHIENLKSERGKILDRNNVELANTGTAYEIGIVPKNVSK--KDYKAIAKELSISEDYIKQQDQNWVQDDTF--VPLKTVKKDEYLSDFAKKF----HLTTNETESRNYPLEKATSHLLGYVGPINSEELKQ----KEYKGYKDDAVIGKKGLEKLYDKKLQHEDGYRVTIVDDSNTIAHTLIEKKKKDGKDIQLTIDAKVQKSIYNNK-NDYGSGTAIHPQTGELLALVSTPSYDVYPFYG--SNEEYNKLTEDKKEPLLNKF-QITTSPGSTQKILTAIG-LNNKTLDDKTSYKIDGKGWQKDKSWGNVTRYEVVNGNIDLKQAIESSDNIFFARVALELGSKKFEKG-KKLGVGEDIPSDYPFYNAQ------ISNKNLDNEILLADS---GYGQGEILINPVQILSIYSALENNGNINAPHLLKDTKN----------KVWKKNIISKENINLLTDGQQVVNKTHKE----DIYRSYANLIGKSGTAELKG----------------RQIGWFISYDK-DNPNAINVKDVQDKG-ASYNAKISGKVYDELYENGNKKYDIDE----------
5	HHPRED-l	2wad_A	0.232	0.796	4.883	threading_5	---------------------------------------------------------SQTKVTTSSARGEIYDASGKPLVENTLKQVVSFTRSKMTDLKEIAKKLLTYVSISSPNLVELFSQLNAVGNFATGTIADPLNDSQVAVIASISKEMPGISISTSWDRKIL-ETSLSSIVGSVSSLPAEEAESYLKK----GYSLNDRVGTSYLEKQYEEVLQGKRPVKEIHLDKHGDMESVENIEEGSKGKNIKLTIDLAFQDSVDALLKSYGVYAVALNPQTGAVLSMSGLKH-DLKTG--EL--------TP-----DSLGTVTNVFVPGSVVKAATISSGWENGVLSGNQTLTDQPI-VFQG-SAPIYSWKAYGSFPITAVEALEYSSNAYVVQTALGIMGGKLRSTFGEYGLGSATGIDLPDESTGLVPKEY----------NFANFITNAFGQF-DNYTPMQLAQYVATIANNGVRLAPHIVEGIYDNNGELIQAIDTKENKVNISESDMAILHQGFYQVSHGTSPLTTGRFDGATVSISGKTGT-----------------------NTNAVAYAPTENPQIAVAVVFPHNTTKNVGPAIARDIINLYNQHHPMN---------------
6	HHPRED-g	2wad_A	0.236	0.796	4.377	threading_6	---------------------------------------------------------SQTKVTTSSARGEIYDASGKPLVENTLKQVVSFTRSNKTDLKEIAKKLLTYVSISSPNLVYLFSQLNAVGNFATGTIADPLNDSQVAVIASISKEMPGISISTSWDRKIL-ETSLSSIVGSVSSLPAEEAESYLKKG----YSLNDRVGTSYLEKQYEEVLQGKRPVKEIHLDKHGDMESVENIEEGSKGKNIKLTIDLAFQDSVDALLKSYGVYAVALNPQTGAVLSMSGLKH-DLKT--GELT--------PD---S--LGTVTNVFVPGSVVKAATISSGWENGVLSGNQTLTDQPIV-FQG-SAPIYSWKAYGSFPITAVEALEYSSNAYVVQTALGIMGGKLRSTFGEYGLGSATGIDLPDESTGLVPKEYN----------FANFITNAFGQFD-NYTPMQLAQYVATIANNGVRLAPHIVEGIYDNNELIQAIDTKEINKVNISESDMAILHQGFYQVSHGTSPLTTGRFDGATVSISGKTGT-----------------------NTNAVAYAPTENPQIAVAVVFPHNTLTKVGPAIARDIINLYNQHHPMN---------------
7	SP3	3lo7a	0.263	0.637	6.101	threading_7	----------------------------------------------LDEYSR--------------QRGQIT-AGGQLLAYSVA-----------------------------------------------------------------------TDGRFRFLRVYPNPEVYAPVTGFYS----------------------LRYSSTALERAEDPILNGSDR--------------------RLRGGNVDTTINPRIQQAGWDAMQQCKGAVVALEPSTGKILALVSSPSYDPNLLASHVQAQAWQRLGDNPASPLTNRAISETYPPGSTFKVITTAAALAAGATETEQLTAAPTI--------PLENYPCGDEPTVSLREAFVKSCNTAFVQLGIRTGADALRSMARAFGLDRPTPLQVAESTVGPIPDSAALGMT-------------SIGQKDVALTPLANAEIAATIANGGITMRPYLVGSLKGPDLANISTTVGYQQRRAVSPQVAAKLTELMVGAEKVAQQ----KGAIPGVQIASKTGTAEH-----------GTDPRHTPPHAWYIAFAPAQAPKVAVAVLVENGAGGALAAPIGRAVIEAALQ--------------------
8	SAM-T99	3oc2A	0.245	0.766	5.103	threading_8	-------------------------------------------------------ARSVRHIAIPAHRGLITDRNGEPLAVSTPVTTLWANPKELMTAKERWPQLAAALGQDTKLFADRIEQ---NAEREFIYLVRGLTPEQGEGVIAL--KVPGVYSIEEFRRFYPAGEVVAHAVGFT---------------------DVDDRGREGIELAFDEWLAGVPGKRQVLKDRRGRVIKDVQTKNAKPGKTLALSIDLRLQYLAHRELRNALGSLVIMDVKTGEILAMTNQPTYNPNN-------------RRNLPAAMRNRAMIDVFEPGSTVKPFSMSAALASGRWKPSDIVDVYPGTLQIG--RYTIRDVSRNSRQLDLTGILIKSSNVGISKIAFDIGAESIYSVMQQVGLGQDTGLGFPGERVGNLPN--------HRKWPKAETATLAYGYGLSV-TAIQLAHAYAALANDGKSVPLSMTRVDRVPDG------------QVISPEVASTVQGMLQQVVEAQGGVFRAQ--VPGYHAAGKSGTARKAY------------------RSLFAGFAPATDPRIAMVVVIDEPFGGLVSAPVFSKVMAGALR-----------LMNVPPDNL
9	MUSTER	1mwrB2	0.259	0.804	3.100	threading_9	-----------------------------------------------------QKDQSIHIENLKSERGKILDRNNVELANTGTAYEIGIVPKNVSK--KDYKAIAKELSISEDYIKQQDQNWVQDDTF--VPLKTVKKDEYLSDFAKKF----HLTTNETESRNYPLEKATSHLLGYVGPINSEELKQKEYKG----YKDDAVIGKKGLEKLYDKKLQHEDGYRVTIVDDSNTIAHTLIEKKKKDGKDIQLTIDAKVQKSIYNNK-NDYGSGTAIHPQTGELLALVSTPSYDVYPFYG--SNEEYNKLTEDKKEPLLNKF-QITTSPGSTQKILTAI-GLNNKTLDDKTSYKIDGKGWQKDKS--WGGYNEVVNGNIDLKQAIESSDNIFFARVALELGSKKFEKG-KKLGVGEDIPSDYPFYNAQ------ISNKNLDNEILLADS---GYGQGEILINPVQILSIYSALENNGNINAPHLLKDTKN----------KVWKKNIISKENINLLTDGQQVVNKTHKEDI----YRSYANLIGKSGTAELKG----------------RQIGWFISYDK-DNPNAINVKDVQDKG-ASYNAKISGKVYDELYENGNKKYDIDE----------
10	SPARKS	2wada	0.236	0.803	5.933	threading_10	---------------------------------------------------------SQTKVTTSSARGEIYDASGKPLVENTLKQVVSFTRSNKTDLKEIAKKLLTYVSISKKEIYLFSQLNAVGNFATGTIATDPLNDSQVAVIASISKEMPGISISTSWDRKILETS-LSSIVGSVSSEKAGLPAEEAESYLKKGYSLNDRVGTSYLEKQYEEVLQGKRPVKEIHLDKHGDMESVENIEEGSKGKNIKLTIDLAFQDSVDALLKSEGVYAVALNPQTGAVLSMSGLK-HDLK---------------TGELTPDSLGTVTNVFVPGSVVKAATISSGWENGVLSGNQTLTDQPIVFQGSAP--IYSWYKLAYGSITAVEALEYSSNAYVVQTALGIMLESAMGKLRSTGLGSATGIDLPDESTGLVPK----------EYNFANFITNAFGQF-DNYTPMQLAQYVATIANNGVRLAPHIVEGIYDNNDLIQAIDTKEINKVNISESDMAILHQGFYQVSHSPLTTGRAFSDGATVSISGKTGT-----------------------NTNAVAYAPTENPQIAVAVVFPHNLTKNVGPAIARDIINLYNQHHPMN---------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.869 to 1mwrB SCOP code=d.17.4.5	TM-score=0.867 to 1mwrB SCOP code=d.17.4.5	TM-score=0.678 to 1pyyA SCOP code=d.11.1.1	TM-score=0.612 to 1pyyA SCOP code=d.11.1.1	TM-score=0.865 to 1mwrB SCOP code=d.17.4.5