Template-based Modeling Results for MEND_ECOLI

Submitted Primary Sequence

>Length 556
MSVSAFNRRWAAVILEALTRHGVRHICIAPGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPELIDCGANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWLREAPRLESEKQRDWFFWRQKRGVVVAGRMSAEEGKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSELQQAQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWLELHPAEKRQPWCVEIPRLAEQAMQAVIARRDAFGEAQLAHRICDYLPEQGQLFVGNSLVVRLIDALSQLPAGYPVYSNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSALYDLNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERERFYLMPQNVHFEHAAAMFELKYHRPQNWQELETAFADAWRTPTTTVIEMVVNDTDGAQTLQQLLAQVSHL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSVSAFNRRWAAVILEALTRHGVRHICIAPGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPELIDCGANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWLREAPRLESEKQRDWFFWRQKRGVVVAGRMSAEEGKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSELQQAQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWLELHPAEKRQPWCVEIPRLAEQAMQAVIARRDAFGEAQLAHRICDYLPEQGQLFVGNSLVVRLIDALSQLPAGYPVYSNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSALYDLNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERERFYLMPQNVHFEHAAAMFELKYHRPQNWQELETAFADAWRTPTTTVIEMVVNDTDGAQTLQQLLAQVSHL
CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHCCCHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCCEEECCCCCHHCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEECCCCCCCCCCEEECCCCCCCHHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSVSAFNRRWAAVILEALTRHGVRHICIAPGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPELIDCGANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWLREAPRLESEKQRDWFFWRQKRGVVVAGRMSAEEGKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSELQQAQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWLELHPAEKRQPWCVEIPRLAEQAMQAVIARRDAFGEAQLAHRICDYLPEQGQLFVGNSLVVRLIDALSQLPAGYPVYSNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSALYDLNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERERFYLMPQNVHFEHAAAMFELKYHRPQNWQELETAFADAWRTPTTTVIEMVVNDTDGAQTLQQLLAQVSHL
5532211221010002101422021000001020010000013122010000011200000010002125200000000010000001000201111110000002101300201021204221000100000020132133011210000002002221100000100212112232332212233412321333322143123130122111112333100000020013102101100320200000100130112010000100102011313201000000111103201201230332100001203131141132111000101200322223323300220130022003102333321231100220031023302000001100100001121222110000210010100000000012022210000000000000010000032120100000000310100100312223221001023101011003104020010321320130022015332000010103332003002201211353
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSVSAFNRRWAAVILEALTRHGVRHICIAPGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPELIDCGANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWLREAPRLESEKQRDWFFWRQKRGVVVAGRMSAEEGKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSELQQAQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWLELHPAEKRQPWCVEIPRLAEQAMQAVIARRDAFGEAQLAHRICDYLPEQGQLFVGNSLVVRLIDALSQLPAGYPVYSNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSALYDLNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERERFYLMPQNVHFEHAAAMFELKYHRPQNWQELETAFADAWRTPTTTVIEMVVNDTDGAQTLQQLLAQVSHL
1	MUSTER	2jlaA	0.958	0.986	3.494	threading_1	-SVSAFNRRWAAVILEALTRHGVRHICIAPGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPELIDCGANQAIRQPGFASHPTHSISL-PRPTQDIPARWLVSTIDHALGTLHAGGVHINCPFAEPLYGE-DDTGLSWQQRLGDWWQDDKPWLREAPRLESEKQRDWFFWRQKRGVVVAGR-SAEEGKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSELQQAQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWLELHPAEKRQPWCVEIPRLAEQAQAVI-ARRDAFGEAQLAHRICDYLPEQGQLFVGNSLVVRLIDALSQLPAGYPVYSNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSALYDLNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERERFY-LPQNVH-FEHAAAFELKYHRPQNWQELETAFADAWRTPTTTVIEVVND-TDGAQTLQQLLAQVSHL
2	SPARKS	3ey9a	0.138	0.950	4.847	threading_2	------KQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCEL-VSSPEQ--IPQVLAIAMRKAVLNR-GVSVVVLPGDVALKPAPEGATMHWY-------HAPQPVVTPEEEELRKLAQLLRYSSNIALMCGSGC--AGAHKELVEFAGKIKAPIVHALRGKEHVEYDNPYDLIGFSSGFHTMMNADTLVLLGTQFPYRAF-----YPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLRALLPLFLDKALEDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFAADD--AIFTCDVGTPTVWAARYLMNGKRRLLGSFNHGSMAAMPQALGAQATEPEQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNSLGFVAMEMK--AGGYLTDGTELHDTNFARIAEACGITGIRVEKASEVDEALQRAFSIDGPVLVDVVVAKEELAIPPQIKLEQAKGF
3	PROSPECT2	2x7jA	0.281	0.991	4.908	threading_3	--TVNPITHYIGSFIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDISVHVQIDERSAGFFALGLAKAKQRPVLLICTSGTAAANFYPAVVEAHYSRVPIIVLTADRPHELREVGAPQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTAAGEAQKRPMGPVHVNVPLREPLMPDLSDEPFGRMRTGRHVSVKTGT---QSVDRESLSDVAEMLAEAEKGMIVCGELSDADKENIIALSKALQYPILADPLSNLRNGVHDKSTSFLKDDELKRKLRPDVVIRFGPMPVSKPVFLWLKDDPTIQQIVIDEDGGWRDPTQASAHMIHCNASVFAEETAATRSSEWLEKWQFVNGRFREHLQTISDVSFEGNLYRILQHLVPENSSLFVGNSMPIRDVDTFFEKDRPFRIYSNRGANGIDGVVSSAMGVCEGTKAPVTLVIGDLSFYHDLNGLLAAKKLGIPLTVILVNNDGGGIFSFLPQASEKFEDLFGTPTGLDFKHAAALYGGTYSCPASWDEFKTAYAPQADKPGLHLIEIKTDRQSRVQLHRDMLNEAVRL
4	PPA-I	2jlaA	0.927	0.984	4.009	threading_4	-SVSAFNRRWAAVILEALTRHGVRHICIAPGSRSTPLTLAAAENSAFIHHTHFDERGLGHLALGLAKVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPELIDCGANQAIRQPGFASHPTHSISL-PRPTQDIPARWLVSTIDHALGTLHAGGVHINCPFAEPLY-GEDDTGLSWQQRLGDWWQDDKPWLREAPRLESEKQRDWFFWRQKRGVVVAGR-SAEEGKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSELQQAQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWLELHPAEKRQPWCVEIPRLAEQAQAVI-ARRDAFGEAQLAHRICDYLPEQGQLFVGNSLVVRLIDALSQLPAGYPVYSNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSALYDLNALALLRQVSAPLVLIVVNNNGGIFSLLPTPQSERER--FYLPQNVH-FEHAAAFELKYHRPQNWQELETAFADAWRTPTTTVIEVVND-TDGAQTLQQLLAQVSHL
5	HHPRED-l	3hww_A	0.940	0.955	3.391	threading_5	MSVSAFNRRWAAVILEALTRHGVRHICIAPGSRSTLLTLAAAENSAFIHHTHFDERGLGHLALGLAKVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPELIDCGANQAIRQPGMFASHPTHSISLPRPTQDIPLVSTIDHALG-TL--HAGGVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQ----DDKPWLREAPLESEKQRWFFQKRGVVVAGRMSAEEGKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSELQQAQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWLELHPAEKRQPWCVEIPRLAEQAMQAVIARRDAFGEAQLAHRICDYLPEQGQLFVGNSLVVRLIDALSQLPAGYPVYSNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSALYDLNALALLRQVSAPLVLIVVNNNG-----------------YLMPQNVHFEHAAAMFELKYHRPQNWQELETAFADAWRTPTTTVIEMVVNDTDGAQTLQQLLAQVSH-
6	HHPRED-g	1t9b_A	0.161	0.959	3.037	threading_6	MDTSFVGLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISRSCTKWNV-MVKSVEELPL--RINEAFEIATSGRPGPVLVDLPKDVTAAILRNPIP-------------------FVMQSINKAADLINLAKKPVLYVGAGILNHDGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSMHGCATANLAVQNADLIIAVGARFDDRVTGNISKFAPRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSKERSEWFAQINKWKKEYPYAYMTPGSKIKPQTVIKKLSKVANDGRHVIVTTGVGQHQMWAAQHWTWNPHTFITSGGLGTMGYLPAAIGAQVAPESLVIDIDGDASFNMTLTELSSAVQAGTPVKILILNNEEGMVTQWQSLFYEHRYSHTHQ-LNPDFIKLAEAMGLKGLRVKKQEELDAKLKEFVSTKGPVLLEVEVDKKVPVLPMVAGGSGLDEF
7	SP3	3ey9a	0.138	0.950	4.926	threading_7	------KQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCEL-VSSPEQ--IPQVLAIAMRKAVLNR-GVSVVVLPGDVALK------PAPEGATMH-WYHAPQPVVTPEEEELRKLAQLLRYSSNIALMCGSGC--AGAHKELVEFAGKIKAPIVHALRGKEHVEYDNPYDLIGFSSGFHTMMNADTLVLLGTQFPYRAF-----YPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLRALLPLFLDKALEDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFAA--DDAIFTCDVGTPTVWAARYLMNGKRRLLGSFNHGSMAAMPQALGAQATEPEQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNSLGFVAMEMK--AGGYLTDGTELHDTNFARIAEACGITGIRVEKASEVDEALQRAFSIDGPVLVDVVVAKEELAIPPQIKLEQAKGF
8	SAM-T99	2x7jA	0.282	0.984	4.983	threading_8	--TVNPITHYIGSFIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDISVHVQIDERSAGFFALGLAKAKQRPVLLICTSGTAAANFYPAVVEAHYSRVPIIVLTADRPHELREVGAPQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAQKRPMGPVHVNVPLREPLMPLSDEPFGRMRTGRHVSVKTGTQ----SVDRESLSDVAEMLAEAEKGMIVCGELHDADKENIIALSKALQYPILADPLSNLRNGTVIDAYDSFLKDELKRKLRPDVVIRFGPMPVSKPVFLWLKDDPTIQQIVIDEDGGWRDPTQASAHMIHCNASVFAEEITAATRSSEWLEKWQFVNGRFREHLQTEDVSFEGNLYRILQHLVPENSSLFVGNSMPIRDVDTFFEKQRPFRIYSNRGANGIDGVVSSAMGVCEGTKAPVTLVIGDLSFYHDLNGLLAAKKLGIPLTVILVNNDGGGIFSFLPQASTHFEDLFGTPTGLDFKHAAALYGGTYSCPASWDEFKTAYAPQADKPGLHLIEIKTDRQSRVQLHRDMLNEA---
9	MUSTER	2q29A	0.146	0.950	3.313	threading_9	LQM----TDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEG-IRYIGFRHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDQGDYEELDQMNAAKPYAKAAFR-VNQPQD--LGIALARAIRVSVSGRPGGVYLDLPANVLAATMEKDEALTTIVKV----ENPSPALLPCPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESAQIPFLPMSMAKGILEDTH---LSAAAARSFALANADVVMLVGARLNWLLAHGKKGWAADTQFIQLDIEPQEIDSNRPIAVPVVGDIASSMQGMLATTPLVWRDILNIHKQQNAQKMHEKTQPLNYFNALSAVRDVLRENQDIYLV-NEGANTLDNARIIDYKPRRRLDCGTWGVMGGMGYAIGASVTSGSPVVAIEGDSAFGFSGMEIETICRYNLPVTIVIFNNG-GIYRDGVDLSGAGAPSPTDLLHHARYDKLMDAFRGVGYNVTTTDELRHALTTGIQSRKPTIINVVIDPAAGTES-----------
10	SPARKS	1ybha	0.160	0.980	4.807	threading_10	ISAPDQPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYL-VMDVED--IPRIIEEAFFLATSGRPGPVLVDVPKDIQ----QQLAIPNWEQAMRLPGYMSRMPKPPEDSHLEQIVRLISESKKPVLYVGGGCL--NSSDELGRFVELTGIPVASTLMGLGSYPDDELSLMHGTVYANYAVEHSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMLKLDFGVWRNELNVQKQKFPLSFKTFGEAIPPQYAIKVLDELT--DGKAIISTGVGQHQMWAAQFYYKKPRQWLSSGGLGAMGGLPAAIGASVANPDIVVDIDGDGSFIMNVQELATIRVENLPVKVLLLNNQHGMVMQWEDRFYKANRAHTFLGIFPNMLLFAAACGIPAARVTKKADLREAIQTMLDTPGPYLLDVICPHQEHVLPMIPSGGTFNDV

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.812 to 2v3wA TM-score=0.989 to native SCOP code=c.31.1.3	TM-score=0.805 to 2ji8A TM-score=0.974 to native SCOP code=c.31.1.3	TM-score=0.850 to 2ji8A TM-score=0.808 to native SCOP code=c.31.1.3	TM-score=0.826 to 2ji8A TM-score=0.895 to native SCOP code=c.31.1.3	TM-score=0.809 to 2v3wA TM-score=0.988 to native SCOP code=c.31.1.3

Experimental Structure

Download 2jlcB

SCOP code=c.31.1.3