Template-based Modeling Results for LYSP_ECOLI

Submitted Primary Sequence

>Length 489
MVSETKTTEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAQPAGWSNWTIGEAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPRIFAKLSRGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGYVLQGHDINDLPYRSGFFPLGPIFAFILCLIITLGQNYEAFLKDTIDWGGVAATYIGIPLFLIIWFGYKLIKGTHFVRYSEMKFPQNDKK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MVSETKTTEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAQPAGWSNWTIGEAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPRIFAKLSRGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGYVLQGHDINDLPYRSGFFPLGPIFAFILCLIITLGQNYEAFLKDTIDWGGVAATYIGIPLFLIIWFGYKLIKGTHFVRYSEMKFPQNDKK
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MVSETKTTEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAQPAGWSNWTIGEAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPRIFAKLSRGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGYVLQGHDINDLPYRSGFFPLGPIFAFILCLIITLGQNYEAFLKDTIDWGGVAATYIGIPLFLIIWFGYKLIKGTHFVRYSEMKFPQNDKK
553333223222133303210000000000000000010011113101000000000000000000100000001011210001002110130000000000000000000000000000000012302010000000000000110212000101100000100000000000001101213223100000011131101100100000000000002001000000221321132013002100000000000000000000111122013232331210100000220102001000000000000000000000000001100222300300120042100200000000000000011111131002000100000000000000000010120023222323202130201100000000000000002103000432020100000000000000000002002113103122031244344
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MVSETKTTEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAQPAGWSNWTIGEAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPRIFAKLSRGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGYVLQGHDINDLPYRSGFFPLGPIFAFILCLIITLGQNYEAFLKDTIDWGGVAATYIGIPLFLIIWFGYKLIKGTHFVRYSEMKFPQNDKK
1	MUSTER	3l1lA	0.185	0.853	2.604	threading_1	-------------AHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG--IAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGW----------------FWFRGETYMA----AIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPN--AALRVSA------SPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATEFGLVSSVSVIFTLVPYLYTCAALLLLGH----GHFGKAR-PAYL----AVTTIAFLYCIWAVVGSG----------AKEVMWSFVTLMVITAMYALN--YNRLH----NPYPLDA----
2	SPARKS	3gi8c	0.177	0.867	7.457	threading_2	---------MELKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRN-LPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGD--NIITGALSILLWMSYVISIALFAKGFAGYFLPLINIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVALLILGLFIFAG------------LITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPI--DELIKAS-----ENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFKSTEGLYITSALGVLFALLFN-------MEGVASITSAVFMVIYLFVILSHYILIDEV---GGRKEIVI-----------FSFIVVLGVFLL--LLYYQWITNRFVFYGIIATFIGVLIFEIIYRKVTKRTMYVKS-----------
3	PROSPECT2	3gi8C	0.165	0.879	3.429	threading_3	M---------ELKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRN-LPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDNIITGLSILLWMSYVISIALFAKGFAGYFNAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVALLILGLFIF-------AGLITIHPSYV-----IPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPI--DELIKASE-----NALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFKSTEGLYITSALGVLFALLFN-------MEGVASITSAVFMVIYLFVILSHYILIDEV--------GGRKEIVIFSFIVVLGVFLLLLYYQWI----------TNRFVFYGIIATFIGVLIFEIIYRKVTKRTFSNNMY-----VKS
4	PPA-I	3l1lA	0.179	0.855	8.020	threading_4	-------------AHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG--IAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGW----------------FWFRGETYMA----AIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPN--AALRVSA------SPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATEFGLVSSVSVIFTLVPYLYTCAALLLLGH---------GHFGKARPAYLAVTTIAFLYCIWAVVGSG----------AKEVMWSFVTLMVITAMYALNY---NRLHKNPYPLDA------
5	HHPRED-l	3gia_A	0.182	0.867	9.124	threading_5	-----------LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRN-LPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDNITGALSILLWMSYVISIALFAKGFAGYFLPLINAPNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---HPSYV---------IPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIK-------ASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFKSTEGLYITSALGVLFALL--F-----NMEGVASITSAVFMVIYLFVILSHYILIDE--------------VGGRKEIVIFSFIVVLGVFLLLLYYQWIT---N---RFVFYGIIATFIGVLIFEIIYRKVTKNNMYVKS-------
6	HHPRED-g	3gia_A	0.183	0.873	7.922	threading_6	-----------LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRN-LPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDNITGALSILLWMSYVISIALFAKGFAGYFLPLINAPNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLIT---IHPSY-------VI-PD-LAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIK--A-----SENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFKSTEGLYITSALGVLFALLF-------NMEGVASITSAVFMVIYLFVILSHYILID--------------EVGGRKEIVIFSFIVVLGVFLLLLYYQWIT---N---RFVFYGIIATFIGVLIFEIIYRKVTKRFSNNMYVKS----
7	SP3	3gi8c	0.180	0.875	6.389	threading_7	MELK---------NKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRN-LPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGD--NIITGALSILLWMSYVISIALFAKGFAGYFLPLINIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVALLILGLFIFAGLITIHPSY----------VIPD--LAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPI--DELIKAS-----ENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFKSTEGLYITSALGVLFALLFN-------MEGVASITSAVFMVIYLFVILSHYILIDEVGGR--------------KEIVIFSFIVVLGVFLL--LLYYQWITNRFVFYGIIATFIGVLIFEIIYRKVTKRTFS---NNMYVKS----
8	SAM-T99	3l1lA	0.167	0.855	3.426	threading_8	AHKVGLIP-------------VTLMVSGAIMGSGVFLLPANLASTGGI--AIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGET--------------------YMAAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPN--------AALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNTKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKAR-----------PAYLAVTTIAFLYCIWAVVG--------SGAKEVMWSFVTLMVITAMYALNYNRLHKNPYPLDA---------
9	MUSTER	3gi9C	0.190	0.881	2.549	threading_9	---------MELKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDIITGALSILLWMSYVISIALFAKGFAGYFLPLIAPINIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLI----------TIHPSYVI--PDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPI--DELIKA-----SENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFK-STEGLYITSALGVLFALLFN------MEGVASITSAVFMVIYLFVILSHYILIDEVG--------------GRKEIVIFSFIVVLGVFLLLLYYQWI----NRFVFYGIIATFIGVLIFEIIYRKVTKRTFSN----NMYVKSLE
10	SPARKS	3l1la	0.170	0.855	6.992	threading_10	-------------AHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG--IAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVF----------------GWFWFRGETYMAA----IQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAA--------LRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLG-----HGHFGKARPAY--------------LAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALN---YNRLHKNPYPLDA------

Predicted Tertiary Structure


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TM-score=0.665 to 2q6hA SCOP code=f.54.1.1	TM-score=0.656 to 2q6hA SCOP code=f.54.1.1	TM-score=0.689 to 2q6hA SCOP code=f.54.1.1	TM-score=0.692 to 2q6hA SCOP code=f.54.1.1	TM-score=0.662 to 2q6hA SCOP code=f.54.1.1