Template-based Modeling Results for LSRD_ECOLI

Submitted Primary Sequence

>Length 330
MRIRYGWELALAALLVIEIVAFGAINPRMLDLNMLLFSTSDFICIGIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQSGVPMPLAILLTLLLGALCGLINAGLIIYTKVNPLVITLGTLYLFAGSALLLSGMAGATGYEGIGGFPMAFTDFANLDVLGLPVPLIIFLICLLVFWLWLHKTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAVAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTAIAVLLVGYLQQGLQMAGVPNQVSSALSGALLIVVVVGRSVSLHRQQIKEWLARRANNPLP
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRIRYGWELALAALLVIEIVAFGAINPRMLDLNMLLFSTSDFICIGIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQSGVPMPLAILLTLLLGALCGLINAGLIIYTKVNPLVITLGTLYLFAGSALLLSGMAGATGYEGIGGFPMAFTDFANLDVLGLPVPLIIFLICLLVFWLWLHKTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAVAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTAIAVLLVGYLQQGLQMAGVPNQVSSALSGALLIVVVVGRSVSLHRQQIKEWLARRANNPLP
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRIRYGWELALAALLVIEIVAFGAINPRMLDLNMLLFSTSDFICIGIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQSGVPMPLAILLTLLLGALCGLINAGLIIYTKVNPLVITLGTLYLFAGSALLLSGMAGATGYEGIGGFPMAFTDFANLDVLGLPVPLIIFLICLLVFWLWLHKTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAVAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTAIAVLLVGYLQQGLQMAGVPNQVSSALSGALLIVVVVGRSVSLHRQQIKEWLARRANNPLP
552320111000000000000000002200113101100110000000000000000001010000000000000000002120100000000000000001001000110301100000000000000000001221121231112112001210223211111100000000100001123131010000002013002113030320000000000000000000000100112131010100000000000001021010100000000000000210020010221001000000000000021011123202212233243334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRIRYGWELALAALLVIEIVAFGAINPRMLDLNMLLFSTSDFICIGIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQSGVPMPLAILLTLLLGALCGLINAGLIIYTKVNPLVITLGTLYLFAGSALLLSGMAGATGYEGIGGFPMAFTDFANLDVLGLPVPLIIFLICLLVFWLWLHKTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAVAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTAIAVLLVGYLQQGLQMAGVPNQVSSALSGALLIVVVVGRSVSLHRQQIKEWLARRANNPLP
1	SPARKS	2dri_	0.094	0.712	1.139	threading_1	-----------------IALVVSTLNNPFFVKDGAQKEADKL--------GYNLVVLDSQNN------PAKELANVQDLTVRG-------------------TKILLINPTDSDA---------VGNAVKMANQANIPVITLDRQATKGEVVSHIASD----------NVLGGKIAGDYIAKKAGEGAKVIELQGIQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTA------HPDVAQN---DEMALGAL--RALQTGKSDVM-------VVGF--------DGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQ
2	PROSPECT2	1ee4a	0.068	0.985	1.577	threading_2	QELPQMTQQMQEQLSATVKFRQILSREHRPPIDVVIQVVPRLVEMLQLEAAWALTNIASGTSAQTKVVVDAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD-----TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNILQTQVVIVLPALRLLLSSPKENIKKEACWTISNITAGNANLIPPLVKLLTKKEACWAISNASSGGLQRPDINRIIEVTLDALENILKMGEADKEAGMEKIFNCQQNEND
3	PPA-I	2nq2A	0.123	0.864	1.218	threading_3	----YPKILFGLTLLLVITAVISLGIGRYIDPVQQQVIFQVRLPRILTALCVGAGLALSGVNPHIIGVTSGSAFGGTLAIFFGFSLYGLFTSTILFGFGTLALVFLFSFKSLLMLILIGMILSGLFSALVSLLQ------YISDTEEKLPSIVFWLMGSFATSNWEKLLFFFVPFLLCSSIL-LSLSWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVAISG-------SIGWVGLIIPHLSRMLVGASLL------PCTMLVGATYMLLVDNVARSLSIPISILTALIGAPLFGVLVYKL---------------------
4	HHPRED-l	2nq2_A	0.135	0.855	1.340	threading_4	----YPKILFGLTLLLVITAVISLGIGYSLSVPDVQQVIFQRLPRILTAVGAGLALIFRNVNIGVTSGSAFGGTLAI-FFG--FSLYGLFTSTILFGFGTLALVFLFSFK---SLILIGMILSGLFSALVSLLQYI-----SDTEEK-LPSIVFWLMGSFATSNWEKLLFFFVPFLLCSSI-LLSLSWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQ-V---AISGS---IGWVGLIIPHLSRMLVGA-NH--QSLLPCTMLVGATYMLLVDNVARDAEIPISILTALIGAPLFGVLVYKL---------------------
5	PROSPECT2	1ejlI	0.092	0.985	1.569	threading_5	VKGINSNNLESQLQATQAARKLLSREKQPPLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND-----PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSITAGRLSKADFKTQKEAAWAITNYTQIVYLVHCGIIEPLTKIIQVILDAISNIFQAAEKLSIMIEEKIEALQRHENE
6	PPA-I	1l7vA	0.121	0.855	1.063	threading_6	QQRQNIRWLLCLSVLLLALLLSLCAGEQWISPGDWQIRLPRTLAVLLVGAALAISGAVQALLLGVSNGAGVGLIAAVLLGQGQLPNWALGLCAIAGALIITLILLRFARRHLSTLLLAGVALGIICSALTWAIYFSTSVDLRQLYWGG-------FGGVDWRQSWLLALIPVLLWICCQSRPNLALG---------EISARQLGLPLWFWRNVLVAATGWVGVSVALAG---------AIGFIGLVIPHILRLCGLTDHR--VLLPGCALAGASALLLADIVARLALLPIGVVTATLGAPVFIWLLLKA---------------------
7	HHPRED-l	2qi9_A	0.131	0.830	1.249	threading_7	QRQNIRWLLSLSV-L-LLALLLSLSAGQWFTPRG-ELFVWQRLPRTLAVVGAALAILFENAELGVSNGAGVGLIAAV-LLGQGLPNWALGLSAIAGALIITLILLRFARR-HLSTLLAGVALGIISSAL-TWAIYF-----STS-VDLR-QL-YW--GGFGGVDWRQSWL-LALPVLLWISS---QSRP---LALGEISARQLGLPLWFWRNVLVAATGW-VGVSV----ALAG---AIGFIGLVIPHILRLSGLT-D---HRVLLGCALAGASALLLADIVAAAAELPIGVVTATLGAPVFIWLLLK----A-----------------
8	PROSPECT2	2fozA	0.143	0.867	1.452	threading_8	MASLSRFRGCLAGALLGDCVGSFYEAHDTVDLTSVLRHVQYYTDDTAMARALVQSLLAPDRGYGAGVVTVFKKLVFEPARAQFNGKGSYGNGGAMRVAGISLAFARLSAQLTHASSLGYNGAILQALAVHLALQGESSLGHMEDLEGDAQSVLDARELGMEER-----PYSSRLKKIGELLDQASVTR--------EEVVSELGNGI-------AAFESVPTAIYCFLRCMEPDPEIPSAFNSLQRTLIYSISLGGDT------DTIATMAGAIA--GAYYGMD--QVPESWQQSCEGYEETDILAQSLHRVF--------------QKS
9	PROSPECT2	1xm9A	0.098	0.988	1.435	threading_9	QQVYQLGGICKLVDLVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVQLTGLLWNLSSTDELIADALPVLADRVIIPFSGWCVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQVENCMCVLHNLSYRLDAEVPTRYRQLEYNALPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLTASKGLMSSGMSQLIGLKEKGLPQIARLLSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSAC--YTVRNLMA--SQPQLAKQYFSMLNNIINLCRSSASPKAAEAARLLSSKELQGVL
10	PROSPECT2	3a6pA1	0.107	0.961	1.404	threading_10	AEKTQVAIVRHFGLQIVMELIANGTLNILEEENHIKDALSRIVVEMIKMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSAENCKLLEILCLLLNEQELRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVF-----------LKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTRHEILSRDPLLLAIIPKYLRASMTEYSRFDFDSAFFNSSRAQQGEVMRLACRLDPKTFQMAGEWLKYQLST--F

Predicted Tertiary Structure


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TM-score=0.734 to 1t5jA SCOP code=a.209.1.1	TM-score=0.659 to 1gcgA SCOP code=c.93.1.1	TM-score=0.777 to 1ialA SCOP code=a.118.1.1	TM-score=0.770 to 1l7vA SCOP code=f.22.1.1	TM-score=0.770 to 1l7vA SCOP code=f.22.1.1