Template-based Modeling Results for LSRC_ECOLI

Submitted Primary Sequence

>Length 342
MLKFIQNNREITALLAVVLLFVLPGFLDRQYLSVQTLTMVYSSAQILILLAMGATLVMLTRNIDVSVGSITGMCAVLLGMLLNAGYSLPVACVATLLLGLLAGFFNGVLVAWLKIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPLLLGVSAIGWLTIILVAFMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKAIAACVLGGISLLGGSGAIIGAVLGAWFLTQIDSVLVLLRIPAWWNDFIAGLVLLAVLVFDGRLRCALERNLRRQKYARFMTPPPSVKPASSGKKREAA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLKFIQNNREITALLAVVLLFVLPGFLDRQYLSVQTLTMVYSSAQILILLAMGATLVMLTRNIDVSVGSITGMCAVLLGMLLNAGYSLPVACVATLLLGLLAGFFNGVLVAWLKIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPLLLGVSAIGWLTIILVAFMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKAIAACVLGGISLLGGSGAIIGAVLGAWFLTQIDSVLVLLRIPAWWNDFIAGLVLLAVLVFDGRLRCALERNLRRQKYARFMTPPPSVKPASSGKKREAA
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLKFIQNNREITALLAVVLLFVLPGFLDRQYLSVQTLTMVYSSAQILILLAMGATLVMLTRNIDVSVGSITGMCAVLLGMLLNAGYSLPVACVATLLLGLLAGFFNGVLVAWLKIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPLLLGVSAIGWLTIILVAFMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKAIAACVLGGISLLGGSGAIIGAVLGAWFLTQIDSVLVLLRIPAWWNDFIAGLVLLAVLVFDGRLRCALERNLRRQKYARFMTPPPSVKPASSGKKREAA
443112213200000000000000000132100031001001100100000000000000220000000000000000010121211100000000000100000000000203010000000000001000100020210311122022012211121101000000000000010130210100000030120031120303001000000000000000000001012221310101001000000000001210101000000000001001000100302110010000000000000102121112221232321322222322322222444425
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLKFIQNNREITALLAVVLLFVLPGFLDRQYLSVQTLTMVYSSAQILILLAMGATLVMLTRNIDVSVGSITGMCAVLLGMLLNAGYSLPVACVATLLLGLLAGFFNGVLVAWLKIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPLLLGVSAIGWLTIILVAFMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKAIAACVLGGISLLGGSGAIIGAVLGAWFLTQIDSVLVLLRIPAWWNDFIAGLVLLAVLVFDGRLRCALERNLRRQKYARFMTPPPSVKPASSGKKREAA
1	SPARKS	2xwub	0.092	0.921	1.039	threading_1	WSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSYDKLGRLLTSYSWQHTEALLYGFQSIAETID--VNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLA-------DHPVMINSV-----LPLVLHALGNPELSVSSVSTLKKICREYDLPPYAANIVAVSQDVLMKQIHKTSQC-MWLM-----QALGFL--LSALQVEEILKNLHSLISPY--IQQLEKLAEEIPNPSNVHILGLLSNLFT---TLDISHPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQAHEPAHF
2	PROSPECT2	1ejlI	0.112	0.994	1.687	threading_2	IVKGINSNNLESQLQATQAARKLLSREKQPPILIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTKEATWTMSNITAGRQDQIQQVVNHGLVPFLV--GVLSKADFKTQKEAAWAITNYTQIVYLVHCGIIEPLTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESKYFS
3	PPA-I	2nq2A	0.173	0.813	1.407	threading_3	-----YPKILFGLTLLLVITAVISLGIGRYSLSVPQID----PVQQQVIFQVRLPRILTA----LCVGAGLALSGVVLQGIFRNGFSLYGLFTSTILFGFGTLALVFLFSFKSLLMLILIGMILSGLFSALVSLLQYISDTEEKLPSIVFWLMGSFATSNWEKLLFFFVPFLLCSSIL-LSLSWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVAISG-------SIGWVGLIIPHLSRMLVGASLL------PCTMLVGATYMLLVDNVARSLSIPISILTALIGAPLFGVLVYKL-------------------------------------
4	HHPRED-l	2nq2_A	0.187	0.813	1.450	threading_4	------YPKILFGLTLLLVITAVISLGIGYSLSVPDVQQVIFQVLPRILTCVGAGLALIFRNPNIGVTSGSAFGGTLAI-FF--GFSLYGLFTSTILFGFGTLALVFLFSFK---SLILIGMILSGLFSALVSLLQYISDTEEKLPSIVFWLMGSFATSNWEKLLFFFVPCSSILLS----LSWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQV----AISGSI---GWVGLIIPHLSRMLVGA-N---HQSLPCTMLVGATYMLLVDNVARDAEIPISILTALIGAPLFGVLVYKL-------------------------------------
5	SPARKS	1ee4a	0.127	0.877	1.035	threading_5	FIQLLYTGSVEVKEQAIWALGNVAG-DSTDYRDMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSTLVQTPALRAV--GNIVTGNDLQTQVVINAG----------------VLPALRLLLSS--------PKKEACWTISTAGNTEQIQAVIDANLIPPLVKLLEV-----AEDKT-KKEACWAISNASSGGLQ----RPDIIRYLVSQ---GCIKPLCDLLEIAD--NRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKCQQNENDKIY
6	PROSPECT2	1ee4a	0.105	1.000	1.635	threading_6	MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEMLQLEAAWALTNIASGTSAQTKVVVDAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLLIRTATWTLSNLCRGKKPQPDWSVVSQALPTAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGLLLSSPKENIKKEACWTISNITAGNTEANLIPPLVKLLACWAISNASSGGLQRPDINRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEND
7	PPA-I	3zuxA	0.134	0.810	1.176	threading_7	ILSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAGPY--------IPWLLGIIMFGMGLTLKPSIGVIAQFAIMPATAWCLSKLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIV--------KMVLLPIVLGLIVHKVLGS--------------KTEKLT----DALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAAPVVAVPGALFSVWHNISGSLLATYWAAKA-------------------------------
8	HHPRED-l	2qi9_A	0.171	0.804	1.449	threading_8	-LTQRQNIRWLLSLSVL-LLALLLSLSAGQWFTPRG-ELFVWQILPRTLALVGAALAILFENPELGVSNGAGVGLIAAVL-LGQGLPNWALGLSAIAGALIITLILLRFARR-HLSTLLAGVALGIISSAL-TWAIYFSTS-VDLRQL-YW--GGFGGVDWRQSWL-LIPVLLWISS----QSRP---LALGEISARQLGLPLWFWRNVLVAATGW-VGVSV----ALAGAI---GFIGLVIPHILRLSGLT-D---HRVLLGCALAGASALLLADIVAAAAELPIGVVTATLGAPVFIWLLLK----A---------------------------------
9	PROSPECT2	1xm9A	0.065	0.939	1.554	threading_9	AKQQVYQLGGICKLVDLVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVQLTGLLWNLSSTDELIADALPVLADRVIIPFSGWCVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYNCMCVLHNLSYRLDAEVPTRYRQLEYNALPEEETNPKGSGWLYHSDAIRTYLN-------LMGKSKKDATQNLTASKGLMSSGMSQLIGKGLPQIARLASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSAC--YTVRNLMA--SQPQLAKQYFSSMLNNIINLCRSSASPKAAEAARLLLS----------DMWSSKELQGVL
10	PPA-I	1l7vA	0.160	0.822	1.134	threading_10	RQQQRQNIRWLLCLSVLLLALLLSLCAGEQWISPIRLPRTLAVLLVGAALAISGAVQALFENGLLGVSNGAGVGLIAAVLLGQGQLPNWALGLCAIAGALIITLILLRFARRHLSTAGVALGIICSALTWAIYFSTSVDLRQLYWGGFGGVDWRQSWLLA----LIPVLLWICCQSRPNLALG---------EISARQLGLPLWFWRNVLVAATGWVGVSVALAG---------AIGFIGLVIPHILRLCGLTDHR--VLLPGCALAGASALLLADIVARLALLPIGVVTATLGAPVFIWLLLKA-------------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.881 to 1l7vA SCOP code=f.22.1.1	TM-score=0.609 to 1xqrA SCOP code=a.118.1.21	TM-score=0.789 to 1wa5B SCOP code=a.118.1.1	TM-score=0.725 to 1l7vA SCOP code=f.22.1.1	TM-score=0.742 to 1l7vA SCOP code=f.22.1.1