Template-based Modeling Results for LRP_ECOLI

Submitted Primary Sequence

>Length 164
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEEECHHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCHHHEEHEECCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
55334333232013001100210242140101200421311202012002302531102000000113103110000000103421330022012003403200100000130000010102102102200020024031021020000012023334222438
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
1	MUSTER	2gqqC	1.000	0.957	4.271	threading_1	-------PGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
2	SPARKS	2gqqa	1.000	0.933	3.547	threading_2	-----------LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
3	PROSPECT2	2e7wA	0.260	0.915	3.383	threading_3	M-----------DEIDLRILKILQYNAKYSLDEIAREIRIPKSTLSYRIKKLEKDGVIKGYYAYINPASLNLDYIVITSVKAKYGK-NYHVELGNKLAQIPGVWGVYFVLGDNDFIVMARYKTREEFMEKFLERVMSIPEVERTSTQVVVKIIKESPNIVI--F
4	PPA-I	2gqqC	1.000	0.957	6.451	threading_4	-------PGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
5	HHPRED-l	2gqq_A	1.000	0.927	3.540	threading_5	-----------LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKT-
6	HHPRED-g	2gqq_A	1.000	0.933	3.263	threading_6	-----------LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
7	SP3	2gqqa	1.000	0.933	3.533	threading_7	-----------LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
8	SAM-T99	2gqqC	1.000	0.957	5.968	threading_8	-------PGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
9	MUSTER	2efpA	0.247	0.915	3.967	threading_9	-----------MDEIDLRILKILQYNAKYSLDEIAREIRIPKSTLSYRIKKLEKDGVIKGYYAYINPASLNLDYIVITSVKA-KYGKNAHVELGNKLAQIPGVWGVYFVLGDNDFIVMARYKTREEFMEKFLERVMSIPEVERTSTQVVVKIIKESPNIVIF--
10	SPARKS	2p5va	0.383	0.939	3.501	threading_10	--------QLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSI-RKAKDAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTD-NAFSHFVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPLNHL

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.837 to 2cyyA TM-score=0.974 to native SCOP code=a.4.5.32	TM-score=0.837 to 2cyyA TM-score=0.974 to native SCOP code=a.4.5.32	TM-score=0.802 to 2cyyA TM-score=0.815 to native SCOP code=a.4.5.32	TM-score=0.695 to 2cyyA TM-score=0.645 to native SCOP code=a.4.5.32	TM-score=0.837 to 2cyyA TM-score=0.974 to native SCOP code=a.4.5.32

Experimental Structure

Download 2gqqC

SCOP code=a.4.5.32