Template-based Modeling Results for LPXB_ECOLI

Submitted Primary Sequence

>Length 382
MTEQRPLTIALVAGETSGDILGAGLIRALKEHVPNARFVGVAGPRMQAEGCEAWYEMEELAVMGIVEVLGRLRRLLHIRADLTKRFGELKPDVFVGIDAPDFNITLEGNLKKQGIKTIHYVSPSVWAWRQKRVFKIGRATDLVLAFLPFEKAFYDKYNVPCRFIGHTMADAMPLDPDKNAARDVLGIPHDAHCLALLPGSRGAEVEMLSADFLKTAQLLRQTYPDLEIVVPLVNAKRREQFERIKAEVAPDLSVHLLDGMGREAMVASDAALLASGTAALECMLAKCPMVVGYRMKPFTFWLAKRLVKTDYVSLPNLLAGRELVKELLQEECEPQKLAAALLPLLANGKTSHAMHDTFRELHQQIRCNADEQAAQAVLELAQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTEQRPLTIALVAGETSGDILGAGLIRALKEHVPNARFVGVAGPRMQAEGCEAWYEMEELAVMGIVEVLGRLRRLLHIRADLTKRFGELKPDVFVGIDAPDFNITLEGNLKKQGIKTIHYVSPSVWAWRQKRVFKIGRATDLVLAFLPFEKAFYDKYNVPCRFIGHTMADAMPLDPDKNAARDVLGIPHDAHCLALLPGSRGAEVEMLSADFLKTAQLLRQTYPDLEIVVPLVNAKRREQFERIKAEVAPDLSVHLLDGMGREAMVASDAALLASGTAALECMLAKCPMVVGYRMKPFTFWLAKRLVKTDYVSLPNLLAGRELVKELLQEECEPQKLAAALLPLLANGKTSHAMHDTFRELHQQIRCNADEQAAQAVLELAQ
CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCEECCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEECCCHHHHHCCCCCHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHCCEEEECCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTEQRPLTIALVAGETSGDILGAGLIRALKEHVPNARFVGVAGPRMQAEGCEAWYEMEELAVMGIVEVLGRLRRLLHIRADLTKRFGELKPDVFVGIDAPDFNITLEGNLKKQGIKTIHYVSPSVWAWRQKRVFKIGRATDLVLAFLPFEKAFYDKYNVPCRFIGHTMADAMPLDPDKNAARDVLGIPHDAHCLALLPGSRGAEVEMLSADFLKTAQLLRQTYPDLEIVVPLVNAKRREQFERIKAEVAPDLSVHLLDGMGREAMVASDAALLASGTAALECMLAKCPMVVGYRMKPFTFWLAKRLVKTDYVSLPNLLAGRELVKELLQEECEPQKLAAALLPLLANGKTSHAMHDTFRELHQQIRCNADEQAAQAVLELAQ
5554332100000010001000000020023212302000010220222202011303300010012000203200200120032014220100000101100010000033320200000011110133310110020011000102223200331302010000101211223332310232131243220000010021210220021002002202421320100000022312210220133113312010011102100110000000001000000103110000020220011001100203100000010123002200233021320020022002213102101210220142031301220020013114
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTEQRPLTIALVAGETSGDILGAGLIRALKEHVPNARFVGVAGPRMQAEGCEAWYEMEELAVMGIVEVLGRLRRLLHIRADLTKRFGELKPDVFVGIDAPDFNITLEGNLKKQGIKTIHYVSPSVWAWRQKRVFKIGRATDLVLAFLPFEKAFYDKYNVPCRFIGHTMADAMPLDPDKNAARDVLGIPHDAHCLALLPGSRGAEVEMLSADFLKTAQLLRQTYPDLEIVVPLVNAKRREQFERIKAEVAPDLSVHLLDGMGREAMVASDAALLASGTAALECMLAKCPMVVGYRMKPFTFWLAKRLVKTDYVSLPNLLAGRELVKELLQEECEPQKLAAALLPLLANGKTSHAMHDTFRELHQQIRCNADEQAAQAVLELAQ
1	MUSTER	1f0kA	0.165	0.890	1.217	threading_1	------KRLMVMAGGTGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPKHGIEIDFIRISGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGY-VSGPGGLAAWSLGIPVVLHEQ---NGIAGLTNKWLAKIATKVMQAFPGAFP-------NAEVVGNPVRTDVLALPL---PQQRLAGREGPVRVLVVGGSQGA--RILNQTMPQVAAKLG---DSVTIWHQSGKGSQQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSGLTVSEIAAAGLPALFVPHKDRQQYWNALPLEKAGAAK---------IIE---QPQLSVDAVANTLAGW--SRETLLTMAERARAAS---IPDATERVANEVSRVAR
2	SPARKS	1f0ka	0.172	0.885	2.492	threading_2	------KRLMVMAGGTGGVFPGLAVAHHLMAQGWQVRWLGTADDLVPKHGIEIDFRISGLRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLG-MGGYVSGPGGLAAWSLGIPVVLHEQNGI----AGLTNKWAKIATKVMQAFPGAFP-------NAEVVGNPVRTDVLALPL---PQQRLAGREGPVRVLVVGGSQGA------RILNQTMPQVAAKLGSVTIWHQSGKGSQQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSGLTVSEIAAAGLPALFVQHKDRQQYWNALPLEKAGAAKI------------IEQPQLSVDAVANTLAGW--SRETLLTMAERARAAS---IPDATERVANEVSRVAR
3	PROSPECT2	3beoA	0.140	0.919	2.865	threading_3	VDMTERLKVMTIFGTRPEAIKMAPLVLELQKHPEKIESIVTVTQVLSIFGITPDFDLNIMKDRQ-----TLIDITTRGLEGLDKVMKEAKPDIVLVHGDTTTTFIASLAAFYNQIPVGHVEARTWDKYSPYPEEMNRQLTGVMFSPTAKSATNLQKENKDIFITGNTAIDALKTTVKETYSHPVLEKLGNNRLV-LMTAHRRENLGEPMRNMFRAIKRLVDKHEDVQVVYPVHMN--PVVRETANDILGDYGRIHLIEPLFHNVAARSYLMLTDSGGVQEEAPSLGVPVLVLRDTTER-----PEGIEAGTLKLA---------------GTDEETIFSLADELLSDKEAHDKMSKASNPY---GDGRASERIVEAILKHFK
4	PPA-I	1f0kA	0.159	0.887	1.303	threading_4	------KRLMVMAGGTGGHVFPGLAVAHHLMA-QGWQVRWLGTDLVPKHGIEIDIRISGLRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGY-VSGPGGLAAWSLGIPVVLHEQ---NGIAGLTNKWLAKIATKVMQAFPG-------AFPNAEVVGNPVRTDVLALPL---PQQRLAGREGPVRVLVVGGSQGA--RILNQTMPQVAAKLG---DSVTIWHQSGKGSQQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSGLTVSEIAAAGLPALFVPHKDRQQYWNALPLEKAGAAKI------------IEQPQLSVDAVANTLAGW--SRETLLTMAERARAAS---IPDATERVANEVSRVAR
5	HHPRED-l	1f0k_A	0.168	0.887	2.738	threading_5	------KRLMVMAGGTGGHVFPGAVAHHLMAQGWQVRWLGTADRLVPKHGIEIFIRISGLRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGY-VSGPGGLAAWSLGIPVVLHEQNGI---AGLTNKWLAKIATKVMQAFPG-------AFPNAEVVGNPVRTDVLALPLP---QQRLAGREGPVRVLVVGGSQGARIL--NQTMPQVAAKLG---DSVTIWHQSGKGSQQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSGALTSEIAAAGLPALFVPFQDRQQYWNALPLEKAGAAKII------------EQPQLSVDAVANTLAGW--SRETLLTMAERARA---ASIPDATERVANEVSRVA-
6	HHPRED-g	3dzc_A	0.167	0.895	4.136	threading_6	----AMKKVLIVFGTRPEAIKMAPLVQQLCQ-DNRFVKVCVTGQHREDQVLEL-FSITDLNIME--PGQTLNGVTSKILLGMQQVLSSEQPDVVLVHGD--TATTFSLAAYYQQIPVGHVEAGNISPWPEEGNRKTAALTQYHFAPTDTSRANLLQENYNIFVTGNTVIDALLAVREKATLESQFPLDASKKLILVTGHRRESF-GGGFERICQALITTAEQHPECQILYPVHNPNVREPVNKLLKG-V--SNIVLIEQPFVYLMDRAHIILTDSGGIQEEAPSLGKPVLVMRETTERPEAV-AA----G---------TVKLVG------TNQQQICDALSLLLTDPQAYQAMSQAH---NPYGDGKACQRIADILAK---
7	SP3	1f0ka	0.180	0.887	2.381	threading_7	------KRLMVMAGGTGGVFPGLAVAHHLMAQGWQVRWLGTADDLVPKHGIEIDFRISGLRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGY-VSGPGGLAAWSLGIPVVLHEQNGIA----GLTNKWAKIATKVMQAFPG-------AFPNAEVVGNPVRTDVLALPL---PQQRLAGREGPVRVLVVGGSQGA--RILNQTMPQVAAKLGDS---VTIWHQSGKGSQQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSGLTVSEIAAAGLPALVPFHKDRQQYWNALPLEKAGAAKI------------IEQPQLSVDAVANTLAGW--SRETLLTMAERARAA---SIPDATERVANEVSRVAR
8	SAM-T99	3ot5A	0.153	0.874	1.047	threading_8	----AKIKVMSIFGTRPEAIKMAPLVLALEKEPESTVVITALDQVLEIFDIKPDIDLDIMKGQTLAEI------TSRVMNGINEVIAAENPDIVLVHGDTSFAAGLATFYQQKGLRTWNKYSP----------EEMNRQLTGVMADIHFSPTKQAKENLLIFVTGNTAIDALKTTVQKDYHHPILENL-GDNRLILMTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMHLNPAVREKAMAILGGHERIHLIEPLDDFHNFLRKSYLVFTDSGGVQEEAPGMGVPVLVLRDTTERPEGIEAGTLKL--------------------IGTNKENLIKEALDLLDNKE-------SHDKMAQAANPYGDGFAANRILAAIK
9	MUSTER	3beoA	0.165	0.906	1.139	threading_9	VDMTERLKVMTIFGTRPEAIKMAPLVLELQKHPEKIESIVTVTRQMLDQGITPDFDLN---IMK-----TLIDITTRGLEGLDKVMKEAKPDIVLVHGDTTTTFIASLAAFYNQIPVGHVEALRTWDKYSPNRQLTGVMADLHFSPTAKSATNLQKENKDIFITGNTAIDALKTTVKETYSHPVLEKLGNNRLVLMT-AHRRENLGEPMRNMFRAIKRLVDKHEDVQVVYPVHMPVVRETANDILGDYG---RIHLIEIDFHNVAARSYLMLTDSGGVQEEAPSLGVPVLVLRDTTE-----RPEGIEAGT----LKLAGT-----------DEETIFSLADELLSDKEAHDKMSKA----SNPYGDGASERIVEAILKHFN
10	SPARKS	3c48a	0.169	0.914	2.119	threading_10	----SHMRVAMISMHTSMNVYILSTATELAKQGIEVDIYTRATRPSQGEIVRVAIAAGPYEGLSKEELPTQLAAFTGGMLSFTRR-EKVTYDLIHSHY-WLSGQVGWLLRDLWRIPLIHTADTPESEARRICEQQLVDNADVLAVNTQEEMQDLMHHDADISVVSPG-ADVELYSPGTERSRRELGIPLHTKVVAFV--GRLQPFKG-PQVLIKAVAALFDRDPDRNLRVIICGG-PSDTYRHMAEELGVEKRIRFLPSELVAVYRAADIVAVPSGLVAMEAQASGTPVIAA-----------------RVGGLPIAVAEGETG--LLVDGHSPHAWADALATLLDDDETRIRMGEDAVEHARTF---SWAATAAQLSSLYN

Predicted Tertiary Structure


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TM-score=0.913 to 1f0kA SCOP code=c.87.1.2	TM-score=0.920 to 1f0kA SCOP code=c.87.1.2	TM-score=0.900 to 1f0kA SCOP code=c.87.1.2	TM-score=0.768 to 1f6dA SCOP code=c.87.1.3	TM-score=0.911 to 1f0kA SCOP code=c.87.1.2