Template-based Modeling Results for LPTG_ECOLI

Submitted Primary Sequence

>Length 360
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECEEEEECCCCEEEEECCEEEEECCCCEEEEEECCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
522111011000110000000000000000000200210230132202010000000000020022000000000000000101431110002102011120010001000000000000011000102200220112022222222233100022211000012133442000000011244431210010120202243210101212101123222120121321202022222310221232321102001200210332233012000100110010000000000000001122222210110000000000000002000001312100000000000000000011101225
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
1	PROSPECT2	1jdha	0.122	0.931	1.552	threading_1	MRSPQMVSAIVRVETARCTAGTLHNLLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHLQKMVALLNKVKFLAITTDCLQILAYGNQKLIILASGYTYEKLLWTTSRVLKVLSNKPAIVEAGGMQALVQNCLWTLRNLSDAATK---------------------QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRL----VQLLVRAHQDTQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLENIQRVAAGVAVLFRMS
2	HHPRED-g	1j4n_A	0.148	0.583	1.046	threading_2	-MASEFKKKLFWREFLAMILFIF---ISIGSALGFHYPISNQTTAVQDNVKVSLAFGLSIATLAQSVGHISVTLG-LLLSCQ------ISVLRAIMYIIAQCVGAIVATAIL-------------------------SGITSSL-----------------------PDNSLG--------------------------L---N----------------------------ALAPG-----------VNS-------------GQ-------GLGI---EIIGTLQLVLCVLATTDRRRRDLGGSGPLAIGFSVALGHLLAIRSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFIL
3	PROSPECT2	3l6aA	0.078	0.744	1.490	threading_3	HHSETVVTEYLNKHFLPEMLSKVIILSDKEKASSLISLLKQ--EGIATFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISEL-------AQPLESGTHFPLFLLCLQQLAKLQDREWLTELFQQSKVNMQKMLPEIDQNKD-----------------------------------------------------------------------------------RMLEILEGKGLSFLFPLLKLEKELLKQIKLDPSPQTIYKWIKDNFVNILMTSFLQYISSEVNAPSKEQLEQEKQLLLSFKPVMQVSALYALQVHCYNSNFPKGMLLRFFGKALFQVNQWLTWLETA
4	PROSPECT2	1xm9A	0.087	0.797	1.462	threading_4	GLTIPKAVQYLSQNVQQAAAGALRNLVFAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAVENCMCVLHNLSYRLDAEVPTRYRQLEYNALPEEETNPKGSGWLYHSDAI-------------------------------------------------------------------------RTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLISDVVRSGASLLSNMSVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQLAKQYFSSSMLNNIINLCRASPKAAEAARLLLSDMW
5	PROSPECT2	2fozA	0.116	0.742	1.451	threading_5	MA---SLSRFRGCLAGALLGDCVGSFYEAHDTVDLTSVLRHVQSLEYTDDTAMARALVQSVDMAHRFAQEAGVVTVFKKLLNPKCRDVFEPARAQFNGVQKFARLSYNGAILQALAVHLALQGESSSEHFLKQLLGHMEDLEGDA------------------------------------------------------------------------------------------QSVLDARELGMEERPYSSRLKKIGELLDQASVTREEVVSELGNGIAAFESVPTAIYCFLRCMEPDPEIPSAFNSLQRTLIYSISTMAGAIAGAYYGMDQVPESWQQGYEETDILAQSLHRVFQKS
6	PROSPECT2	3qxyA	0.090	0.958	1.424	threading_6	LDPVACFLSWCRRVLFVVPRAALLSQHTCSIGGLLERERVALQSQSGWVPLLLALLHELQAPASRWRPYFALWPELGRLEHPMFWPEEERRCLLQGTGVPEAVEKDLANISIVLPFMEAHPDLFSLRVRSLELYHQLVALVMAYSFQEPLE----KEPNSPVM--------VPAADILNHLANHNANLEYSANCLRMVATQP---IPKGHEIFNTYGQMEPYPDNTDDTADIQMVTVREAALQGTKTEAERHLVYERWDFLCKLEMVGEEEELTTTLKVLCMPAEEFRELKDQKREEGSLTITNIPKASWRQLLQNSVLLTLQGLLSNKEVYAKLSWEQQALQVRYGQKMILHQLLELTS
7	MUSTER	3ea5B	0.106	0.969	0.852	threading_7	LSSIKDVVPNLLNLLVSMSAGACLQLFAQNCLEPVLEFVEQNITADNWRNREAAVMAFGSPDKVQRTYYVHQALPSILNLMN-SLQVKETTAWCIGRIADSVAESHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYN--FYPALVDGLIGAANRIDNEFNARASAFSA---TTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKPSSVEADMLMGLFFRLLEKKAFIEDDVFYAISALAASLLETFSPYLLKALNQVDSPVSITAVGFIADISNSL---YSDAMMNVLAQMISNP--ARRELKPAVLSVFGDIASNIGA
8	SPARKS	1z1wa	0.111	0.947	0.790	threading_8	RNSANVIAHEIAHQWFGDLVLWLNESFATFMSYKTMDTL--FPEWSFWGDFFVSRTSGALRSDSLNTHPIEVDVRDPDEISQIFDE----ISYGKGASILRMIEDYAGYEEFRKGISKYLNDHKFGNAEGSDLWTAIEDVSGKPVKRVMEYWIKNPGYPVIKLKR---NGRKITMYQTRFLLNGEEEGRWPV-PVNIKKKDGVERILLEDEASIEADGLIKINADSAGFYRVLYDDATFSDVMGHYRDLSRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDHNVITAIVGQMEYLRMLTHAF---------DDDARAFCRSRMQFLTGKQDENLKIALGRVSRLYVMVDESYAEEMS
9	PROSPECT2	2bkuB2	0.072	0.731	1.424	threading_9	TFVMDKLGQTMAQSLQELQSNILTVLAAVIVADMLMGLFFRLLEKKDSAFDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSISNSLEEDFRRYSDAMMNVLAAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGT----------------------------------------------------------------------------------------LEALDYQIKVLEAVLDAYVGIVAGLHDKPEALF---------PYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQLSL
10	PPA-I	3snhA2	0.071	0.825	0.905	threading_10	-----------------PDDPARKTKALLQMVQQFAVDFEKRIEGS-GGARINRIFHERFPFELVKMEFDEKELRREISYAIKPDMAREPCLKCVDMVISELISTVRQCPRLREEMERIVTTHIREREGRTKEQVMLLIDIELAYMNTNHEDFIGFAN-------AILVIRKGWLTINNIGISKEYWFVLTAENLSWYKDDEMLSVDNLKLRDVEKSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPERVGPQLERQVETIRNLVDSYMAIVNKTVRDLM----------PKTIMHLMINNTKEFIFSELLANLYSC----------------------------

Predicted Tertiary Structure


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TM-score=0.647 to 1ialA SCOP code=a.118.1.1	TM-score=0.663 to 1j4nA SCOP code=f.19.1.1	TM-score=0.448 to 1ug3A SCOP code=a.118.1.14	TM-score=0.609 to 1xm9A SCOP code=a.118.1.24	TM-score=0.615 to 1t5jA SCOP code=a.209.1.1