Template-based Modeling Results for LPTF_ECOLI


  Submitted Primary Sequence

>Length 366
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCEEEECCCCCEEEEEEECCCCEEEEEEEEEECCCCCCCEEEEEECCCEEEECCCCCEEEEEECCEEEEECCCCCEEEECCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
321110002200100000000000000012002001200323010110000000000200120000000000000002012200100020011121100100000000000000001210011012111200121323321220231201213311000001213222021000011234242220000022020121432220000120211212222221211323313121133212233322311202211323233110100110000000000000000001222231311000000000000000110021002213010100000000000000000001211101202211243234
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
1PROSPECT21jdha0.1030.9841.643threading_1IMRSPQMVSAIVRTMQCTAGTLHNLSVLFYAITTLHNLLLHQEGAKMAVRLAGG-LQKMVALLNKVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVILSNLTCNNYKNKMMVCQVGGTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGALCPANHAPLREQGAIPRLVQLLVRAHQDT--QFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLENIQRVAAGVLCELAQD---KEAAEAIEAEGAT
2PROSPECT21ejlI0.0880.8961.601threading_2GTIVKGINLESQLQATQAARKLLSNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTSEQTKAVVDAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA--------------------------------------IGNIVTGTDEQTQKVIDAGALAVPSLLTNPKTNIQKEATWTMSNDQIQQVVNLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL
3PROSPECT23a6pA10.1250.8741.502threading_3MDQVNALCEQLVKAVHFGLQILEHVVLKNSVMELIANGTLNILELSRIVVEMIKREPDMLIELDTLSKGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNEQE----------------------------------------------LQLGAAECLLIAVSRKGKLEDRKPLMVLFGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFLRSSTQMTWGALFRHEILDPLLLAIIPKYLRASMTNLYSRFDFDSDEDFNAFFNSSSTF
4PROSPECT21xm9A0.0680.8441.494threading_4GGICKLVDQNVQQAAAGALRNLVFAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAVENCMCVLHNLSYRLDAEVPTRYRQLEYNALPEEETNPKGSGWLYHSDAIRLMGKSKKDATLEACAGALQN--------------------------------------------LTASKGLMSSGMSQLIGLKEKGLPQI--ARLLQSGNSDVVRSGASLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLM-----------ASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLELQGVL
5PROSPECT21ee4a0.0960.8851.474threading_5QELPQMTQMQEQLSATVKFRQILDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTSAQTKVVVDVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK-----LIYSMDISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRA-------------VGNIVTG------------------------NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNTEQIQAVILIPPLVKLLEVAEDKTKKEACWAISNASSGGLPDIIRYLVSQGCIKPLCDLLENRIIEVTLDALENILKMGEADKNADFIEKAGGM
6MUSTER3v71A0.0950.9230.794threading_6ISLEDVLLN-----------QLIDFAIDPSGVKFLEANYPLD-SEDQIRKAVFEKFTESTTLFVGLCH-NGNFIVQKLVELATPAEQREL----LRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMC------TDQISIHVIVVKQLPVDMWT--FFVHFLSSGDSLMAVCQDKYGRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFKSSGIMEMYRDTIIDKCLLRLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEIFSVKDVESNRDALDILLFHQYGNYVVQQMISICTAALLPPAILLLYSGWYEKMKQRVLQHASRLERFSSGKKIIDSVMRH---
7SPARKS3ebga0.0790.9340.719threading_7ARILTVVGHEYFHWFQLTLKEGLTVHRENLFSEEMT-----KTVTTRLSHVDLLRSVQFLEDSSPLSHPIRPESYVSMENFYTTTVYDKGS--EVMRMYLTILGEEYYKKGFDIYIKKNTCEDFNYAMEQAYKMKKADNSANLNQYLLWFSQSGTPHVSFKYNYDEKKQYSIHVNQYTKPDENQISVGLINPENGKEMISQTTLELTKESDTFVFNNIAVKPIPSLFRGFSAPV----YIEDQLTDEERILLLKYDSDAFVRYNSCTNIYMKQILMNYNEFLKAKNEKLESFQLTPVN-----------AQFIDAIKYLLEDPHADAGFKSYIPQDRYI--INFVSNLDTDVLADTKEYIYKQIGD
8PROSPECT21hr6b0.0800.9261.471threading_8LTIQQGIELEIENRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFIKENTLPTTHIAIALEGVSWSAPDYFVNWDRAIGTGTNSPSPLAVAASQN---GSLANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIEWKRIKSGKISDAEVNRAKAQLKAALL--------------LSLDGSTAIVEDIGRQVVTTGKRLSPEEVFE------QVDKITKDDIIMWANYRLQTSTVPNVSYIEEKLNQ----
9PPA-I3snhA20.0610.8090.974threading_9LQMVQQFAVDFEKRIEGSGGARINRIFHERFPFELVKMFDEKELRREISYAIKPDMAFETIVKKQVKKIREPCLKCVDMVISELISTVRQCTKKQY----PRLREEMERIVTTHIRE--REGRTKEQVMLLIDIELAANAILVIRKGWLTINNIGISKEYWFVLTAE----NLSWYKDDEEKEKEYMLSVDNLKLRDVEKSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPER-------VGPQLERQVETIRNLVDSYMAIVNKTVRDLM---------PKTIMHLMINNTKEFIFSELLANLYSC--------------------------------------------
10HHPRED-l1j4n_A0.1670.6040.530threading_10MAKKKLFWREFLAMILFIFISIGSALGFH-YPIKSNQTTGAVQDNVKVS------------LAFGLSI-ATLAQSVGHISGAHTLGLLLSCQISVLRAIM-YIIAQCVGAIVATAILSGI---------------TSSL---------------------------------------PDNSL-----------------GLN----------ALAPGV-------------------------------------NSGQGLGIEI-------IGTLQLVLCVLATTDRRRRDGGSGPLAIGFSVALGHLLAIDPARSFGSTHNFQDHWIFWVGPFIGAALAVLIYDFILAPRSSVKVWTS-----

  Predicted Tertiary Structure

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TM-score=0.691 to 1wa5B
SCOP code=a.118.1.1
TM-score=0.799 to 1ialA
SCOP code=a.118.1.1
TM-score=0.596 to 1u6gC
SCOP code=a.118.1.2
TM-score=0.738 to 1xm9A
SCOP code=a.118.1.24
TM-score=0.766 to 1ialA
SCOP code=a.118.1.1