Template-based Modeling Results for LPTC_ECOLI

Submitted Primary Sequence

>Length 191
MSKARRWVIIVLSLAVLVMIGINMAEKDDTAQVVVNNNDPTYKSEHTDTLVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAKLTNDRMLYLYGHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRTSYEIQNKQTQP
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSKARRWVIIVLSLAVLVMIGINMAEKDDTAQVVVNNNDPTYKSEHTDTLVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAKLTNDRMLYLYGHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRTSYEIQNKQTQP
CCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEEEECCCCCEEEECCEEEEECCCCCCEEEEEECEEEECCCCEEEEECCEEEEECCCCCCCCEEEECCEEEECCCCEEEECCCEEEECCCCEEEEEEEEEECCCCEEEEECCEEEEECCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSKARRWVIIVLSLAVLVMIGINMAEKDDTAQVVVNNNDPTYKSEHTDTLVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAKLTNDRMLYLYGHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRTSYEIQNKQTQP
43112000000000000000000123433223222343212110110100111441111020102101112333202012010000354422201010120202433101021101011123424222020220201122120202220102022000001102011422201012302012323444358
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSKARRWVIIVLSLAVLVMIGINMAEKDDTAQVVVNNNDPTYKSEHTDTLVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAKLTNDRMLYLYGHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRTSYEIQNKQTQP
1	MUSTER	3my2A	0.960	0.649	2.164	threading_1	----------------------------------------------------------SYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAKLTNDR-LYLYGHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTF-NSSGLKRGNLRSKNAELIEKVRTSYEI-------
2	SPARKS	3my2a	0.960	0.649	2.801	threading_2	----------------------------------------------------------SYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAKLTNDR-LYLYGHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTF-NSSGLKRGNLRSKNAELIEKVRTSYEI-------
3	PROSPECT2	3my2A	0.984	0.649	2.079	threading_3	----------------------------------------------------------SYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAKLTNDR-LYLYGHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSG-LKRGNLRSKNAELIEKVRTSYEI-------
4	PPA-I	3my2A	0.960	0.649	5.095	threading_4	----------------------------------------------------------SYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAKLTNDR-LYLYGHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTF-NSSGLKRGNLRSKNAELIEKVRTSYEI-------
5	HHPRED-l	3my2_A	1.000	0.649	8.648	threading_5	----------------------------------------------------------SYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAKLTNDR-LYLYGHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLK-RGNLRSKNAELIEKVRTSYEI-------
6	HHPRED-g	3my2_A	1.000	0.649	8.420	threading_6	----------------------------------------------------------SYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAKLTNDR-LYLYGHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLK-RGNLRSKNAELIEKVRTSYEI-------
7	SP3	3my2a	0.960	0.649	1.360	threading_7	----------------------------------------------------------SYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAKLTNDR-LYLYGHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTF-NSSGLKRGNLRSKNAELIEKVRTSYEI-------
8	SAM-T99	3my2A	1.000	0.644	6.049	threading_8	----------------------------------------------------------SYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAKLTND--LYLYGHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLK-RGNLRSKNAELIEKVRTSYEI-------
9	MUSTER	2r19B	0.172	0.702	1.317	threading_9	-------------------------------AVTGDTDQPI-------------------HIESDQQSLDMQGNVVTFTGNVIVTQG-----TIKINADKVVVTGKEVIDGYGKATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDVTTVLVPSQLQD--
10	SPARKS	2r19a	0.156	0.670	1.171	threading_10	--------------------------------VTGDTDQP-------------------IHIESDQQSLDMQGNVVTFTGNVIVTQGT-----IKINADKVVVTGKEVIDGYGKATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSD-------KGKRVTT

Predicted Tertiary Structure


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TM-score=0.424 to 1i5lC TM-score=0.987 to native SCOP code=b.38.1.1	TM-score=0.410 to 1m5qY TM-score=0.986 to native SCOP code=b.38.1.1	TM-score=0.424 to 1i5lC TM-score=0.987 to native SCOP code=b.38.1.1	TM-score=0.413 to 1m5qY TM-score=0.988 to native SCOP code=b.38.1.1	TM-score=0.424 to 1i5lC TM-score=0.987 to native SCOP code=b.38.1.1

Experimental Structure

Download 3my2A

SCOP code=b.159.2.1