Template-based Modeling Results for LPTA_ECOLI

Submitted Primary Sequence

>Length 185
MKFKTNKLSLNLVLASSLLAASIPAFAVTGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVLVPSQLQDKNNKGQTPAQKKGN
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKFKTNKLSLNLVLASSLLAASIPAFAVTGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVLVPSQLQDKNNKGQTPAQKKGN
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEECCEEEEEEEEEEEECCCCCCEEEEEECCCEEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEEEEECCCEEEEEEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKFKTNKLSLNLVLASSLLAASIPAFAVTGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVLVPSQLQDKNNKGQTPAQKKGN
54132111010000000000000001023233322020200112022422100010101012121202011010112334322100202221010212244232020200201011241101001101022232102011010003322020222534201000113323344342322244438
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKFKTNKLSLNLVLASSLLAASIPAFAVTGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVLVPSQLQDKNNKGQTPAQKKGN
1	MUSTER	2r19B	0.993	0.762	2.817	threading_1	--------------------------AVTGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGKE----VIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVLVPSQLQD--------------
2	SPARKS	2r19a	0.970	0.730	4.030	threading_2	---------------------------VTGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGQGKE--VIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVL---------------------
3	PROSPECT2	2r19A	0.956	0.730	2.162	threading_3	VT---------------------------GDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGQGKE--VIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVL---------------------
4	PPA-I	2r19B	0.993	0.762	3.897	threading_4	--------------------------AVTGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGKE----VIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVLVPSQLQD--------------
5	HHPRED-l	2r19_A	1.000	0.730	7.762	threading_5	---------------------------VTGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPG--QGKEVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVL---------------------
6	HHPRED-g	2r19_A	1.000	0.730	8.416	threading_6	---------------------------VTGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPG--QGKEVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVL---------------------
7	SP3	2r19a	0.970	0.730	1.760	threading_7	---------------------------VTGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGQGKE--VIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVL---------------------
8	SAM-T99	2r19B	0.993	0.762	5.367	threading_8	--------------------------AVTGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGK----EVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVLVPSQLQD--------------
9	MUSTER	3my2A	0.161	0.638	0.777	threading_9	----------------------------------SYRLIAQHVEYYSDQAVSWFTQPVLTTFDKWSVKADKAKLT--NDR-----LYLYG-HVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLKRGN--RSKNAELIEK----VRTSYEI-------------------
10	SPARKS	3my2a	0.134	0.643	0.663	threading_10	----------------------------------SYRLIAQHVEYYSDQAVSWFTQPVLTTDKIWSVKADKAKLTNDR-------LYLYG-HVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTF-NSSGLKRGNLRSKNAELIEK----VRTSYEI-------------------

Predicted Tertiary Structure


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TM-score=0.420 to 2q03A TM-score=0.977 to native SCOP code=b.159.2.1	TM-score=0.420 to 2q03A TM-score=0.977 to native SCOP code=b.159.2.1	TM-score=0.412 to 3elgA TM-score=0.827 to native SCOP code=d.98.2.1	TM-score=0.419 to 1vr7A TM-score=0.827 to native SCOP code=d.156.1.2	TM-score=0.420 to 2q03A TM-score=0.977 to native SCOP code=b.159.2.1

Experimental Structure

Download 2r19B

SCOP code=a.102.3.2