Template-based Modeling Results for LPOB_ECOLI

Submitted Primary Sequence

>Length 213
MTKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQPVPTVPSVPTIPQQPGPIEHEDQTAPPAPHIRHYDWNGAMQPMVSKMLGADGVTAGSVLLVDSVNNRTNGSLNAAEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGTRSKAIGIARNVGAHYVLYSSASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQPVPTVPSVPTIPQQPGPIEHEDQTAPPAPHIRHYDWNGAMQPMVSKMLGADGVTAGSVLLVDSVNNRTNGSLNAAEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGTRSKAIGIARNVGAHYVLYSSASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQQ
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQPVPTVPSVPTIPQQPGPIEHEDQTAPPAPHIRHYDWNGAMQPMVSKMLGADGVTAGSVLLVDSVNNRTNGSLNAAEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGTRSKAIGIARNVGAHYVLYSSASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQQ
553102000000000001101123322223324222332232333232232222223322323333322322242432212100220013111132022110000011213221201012002101300242120100223111201321222322321132201000211112000000012323111020000003101000213322356
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQPVPTVPSVPTIPQQPGPIEHEDQTAPPAPHIRHYDWNGAMQPMVSKMLGADGVTAGSVLLVDSVNNRTNGSLNAAEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGTRSKAIGIARNVGAHYVLYSSASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQQ
1	PROSPECT2	1pswA	0.067	0.981	1.300	threading_1	IPEIGERRKLGHSALVPLFAGIPHRTGWRGERYGLLNDVRVLDKEAWPLVERYIALAYDKGIRTAQDLPQPLLWPQLQVSEGEKSYTCNQ---FSLSSERPIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTLAGETQLDQAVILIAACKAIVTNDVAAALNRPLVAL-YGPSSPDRVIRLITGEGYHQ
2	PPA-I	2rrlA	0.140	0.704	1.013	threading_2	----------HMASDDRATGPALTPLVVAAAATSAKVEVDSPPAPVTHGAAMPTLSSATAQPLPVASAPVLSAPLGSHEWQQTFSQQVMLFTRQGPEELGQVHISLKLDDNVSPHSHLEAALPMLRTQLAESG-IQLGQSSISSESFAGQQQSSSQQQSSR----------------------------------------------------
3	PROSPECT2	2rrlA	0.127	0.704	1.282	threading_3	HMASDD----------RATGPALTPLVVAAAATSAKVEVDSPPAPVTHGAAMPTLSSATAQPLPVASAPVLSAPLGSHEWQQTFSQQVMLFTRQGQKLDDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESG-IQLG-----------------------------------QSSISSESFAGQQQS-----------------SSQQQSSR
4	HHPRED-l	3ly7_A	0.083	0.451	1.772	threading_4	--------------------------------------------------------------------------------------------------LNPRDIDINMVNKSCNSSYAIGVGDLVATSLNTFSTF-MVHDK--------------INYNI-DEPSSSGKTLSIAF-VNQRQYRAQQC-FMSIKLVDNADGSTMLDKRYVITN-
5	PROSPECT2	1jj2c	0.092	0.915	1.194	threading_5	MTPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPKLDGRARRVPQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRSARGHEFDRDEVPVVVSDDFEDLVK------TQEVVSLLEALDV------------HADIDRADETKIKAGQGSARGRKYRRPASILFVTSDEPSTAARAGADVATASGRLTVFTESAEVAER
6	HHPRED-g	3ly7_A	0.082	0.455	2.512	threading_6	--------------------------------------------------------------------------------------------------LNPRDIDINMVNKSCNSWSAIGVGDLVATSLNTFSTF-MVHD--------------KINYNI-DEPSSSGKTLSIAF-VNQRQYRAQQC-FMSIKLVDNADGSTMLDKRYVITNG
7	PROSPECT2	1q74A	0.101	0.972	1.126	threading_7	ETPESLSNGATIAHYTSRGTCTLGEEGEVIGDRWAQLTADHADQLGGYLGVSAPIYLGGAGRWRDSGMARSQRRFVDADPRQTVGALVAIIRELRP----HVVVTPNGGYGHPDHVHTHTVTTAAVAAAGVHPGYWTVLGLSALISGARALVPDDLRPEWRAAKVAALAAHATQVVVGPTGRAAALSNNLALPI--LADEHYVLAGGSALGFT
8	HHPRED-l	2hqs_A	0.152	0.526	1.163	threading_8	---------------------------------------------------------------------------------------V-RIVIDSGVSGRPIG-VVPFQWAGPGAA-PEDIGGIVAADLRNSGKFNPLDRARLPQQP----GSA--QEVQP----AAWSALGIDAVVVGQVTPNDGSYNVAYQLVDTGGAPVLYKVNKQLRY-
9	HHPRED-g	2hqs_A	0.189	0.521	1.852	threading_9	-------------------------------------------------------------------------------------------VRISGVDSGRPIGVVPFQWAGPGAA-PEDIGGIVAADLRNSGKFNPLDRARLPQ---QPG-SA--QEVQP----AAWSALGIDAVVVGQVTPNPGSYNVAYQLVDTGGAPVLAQNSYKVNKQ
10	PROSPECT2	1vqwA2	0.092	0.967	1.099	threading_10	LPTIRKPSGLVTAKALLTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLYRDLQTNTPIELGYCDQSFKPQTLQFPHRHTIQEYQRIYAQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARVW--SGRLKLPSKEEQLKWQDELFSLSGANNYHATYINKLHDWCKQAT---PVLEEEFPSPYWGEKERSIRENWSIR--AKFFGIE

Predicted Tertiary Structure


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TM-score=0.623 to 1pswA SCOP code=c.87.1.7	TM-score=0.350 to 1v4yA SCOP code=b.92.1.6	TM-score=0.401 to 2hs5A SCOP code=a.4.5.6	TM-score=0.436 to 1qe0A SCOP code=c.51.1.1	TM-score=0.699 to 1ffkC SCOP code=c.22.1.1